Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59770 2268 / 0 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) AT1G17340 132 / 5e-31 Phosphoinositide phosphatase family protein (.1) AT1G22620 96 / 1e-19 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G43220 92 / 2e-18 Phosphoinositide phosphatase family protein (.1.2) AT3G14205 86 / 2e-16 Phosphoinositide phosphatase family protein (.1) AT5G20840 84 / 6e-16 Phosphoinositide phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071300 [exp] 99 / 1e-20 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 97 / 7e-20 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 96 / 1e-19 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 96 / 2e-19 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.018G063700 [exp] 86 / 1e-16 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 84 / 9e-16 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 63 / 1e-09 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043474 [exp] 2117 / 0 AT3G59770 1989 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10034113 [exp] 2014 / 0 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10014827 [exp] 95 / 3e-19 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10039913 [exp] 95 / 4e-19 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10027650 [exp] 94 / 5e-19 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10013184 [exp] 92 / 2e-18 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10037446 [exp] 92 / 2e-18 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain CL0031 [poplar] [flax] Phosphatase PF02383 [poplar] [flax] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Potri.013G128500.1 pacid=42811269 polypeptide=Potri.013G128500.1.p locus=Potri.013G128500 ID=Potri.013G128500.1.v4.1 annot-version=v4.1 ATGGAATCACCCGTTGGTGGTTCAAGACTCACATCTGTGGTTGTTGCAACCCTGGATAGTGGTGAAGTTTACATTATTGCCAGCTTGTCTTCTAGAACTG ATACTCAAGTGATATATGTTGACCCAACAACAGGGTTGCTTCGATTCAGTGGGAAGTTAGGTTTTGATGTCTTTAAATCTGAAGATGAAGCTTTAAATTA CATTACAAATGGATCACGATGGCTTTGTAGGAGTACTACAAATGCGAAGGCGATATTAGGATATGCTGCCTTAGGAAGCTTTGGGCTGCTTCTTGTAGCT ACAAAGTTGACTGCCAGCATTCCAAATTTGCCTGGTGGAGGATCCGTGTATACAGTAACAGAGAGCCAATGGATCAAAATATCTCTTCAAAACCCTCAGC AGCAGGGTAAAGGGGAGGTGAAAAGTGTTCTAGAGTTAACTGAGCTTGACATTGATGGGAAGCACTACTTCTGCGAGACAAGAGATATCACTCGACCTTT TCCAAGTCGTATGCCCTTGGAAAATCCCGATGATGAATTTGTTTGGAATGGATGGTTTTCAATGCCTTTCAAAAACATCGGGCTTCCAGAGCACTGTGTC ACACTCCTGCAGGGCTTTGCAGAATGTCGAAGTTTTGGAAGCTCAGGGCAGTTAGAAGGGATCGTTGCTCTAACAGCTCGCCGTAGTAGACTGCATCCTG GTACTCGATACTTGGCGAGGGGGATAAATTCATGTTTTAGCACAGGAAATGAAGTGGAATGTGAGCAACTTGTATGGGTGCCAAAGAGGACTGGTCAGAG TGTTCCTTTCAACACATACATTTGGAGACGAGGAACGATTCCAATTTGGTGGGGTGCAGAATTGAAGATGACTGCTGCAGAAGCAGAGATTTATGTTTCA GATCGGGAACCTTATAAAGGAAGCTCACAGTACTATCAGAGGTTGAGTAAACGATATGATGCTCGCAGTTCTGATATAGCTGTTGGGGAAGGTCAGAAGA AAAAACCTTCTGTTCTAATTGCATGCATCAACTTGCTTAGGAATGGAACAGGAAAGTCAGAAGCTCTTCTAGTTCATCATTTTGAGAAATCTTTAAGCTA TATAAAATCAACTGGAAAACTTCCCTATACGCGAATACATCTTATAAATTATGATTGGCATGCCAGTGTAAAACTAAACGGTGAACAACAAACAATTGAA GGACTGTGGAAACTTCTCAAAGCACCCACTGTGGCTGTTGGCATTTCTGAAGGGGATTATTTACCTTCACGACAAAGACTTAATGATTGCAGGGGTGAAA TCATCTATACTGATGATTTTGCAGGTGCCTTCTGCTTAAGATCACATCAAAATGGAGTCCTCCGTTTTAACTGTGCAGATTCCTTGGATAGAACCAATGC TGCTAGTTATTTTGGCGCTCTACAATGTTTTGTGGAGCAATGCAGGAGGTTGGCCATATCACTTGATAGTGATTTGACATATGGTTATCAGTCAGTCAAT AACTATGGCGGATATACAGCTCCATTGCCACCAGGCTGGGAGAAACGATCTGATGCTGTCACAGGGAAAACATATTATATTGATCACAACACTAGAACTA CAACATGGAAGCATCCATGTCCAGATAAACCTTGGAAGAGATTTGACATGTCATTTGAGGAGTTCAAGAGTTCAACAATTTTATCTCCTCTATCTCAGCT GGCTAATCTTTTCCTTCTTGCTGGTGATATCCATGCAACACTTTATACGGGTTCTAAAGCTATGCACAGTCAAATTCTTAGCATATTCAATGAAGAAGCA GGAAAATTTAAACAGTTTTCTGTAGCTCAAAATTTTCAAATCACTTTACAGAGAAGATATAAAAATGTACTTGTAGATAGCTCTCGTCAGAAGCAGTTGG AGATGTTTCTTGGATTGAGACTTTTCAAGCATCTTCCATCAGTTCCAGTTCAACCTCTAAATGTTCCTTCTCGACCTTCCGGTTTCTTTCTTAAGCCAGT CCCCAACATCACTCCAAGTTCCAATGGTGGGTCCAGTCTTCTGAGTTTCAAGAGAAAAGACTTGATATGGGTTTGCCCACAAGGTGCAGATGTGGCTGAA CTTTTTATCTATCTTGGTGAGCCTTGCCACGTCTGTCAGCTTCTTCTAACACTATCTCATGGGGCAGATGATTCCACTTACCCATCAACTGTTGATGTGA GGACGGGACGCTACCTAGATGGGCTTAAACTAGTTGTGGAGGGTGCTTCCATACCTCAGTGTGTAAAGGGGACAAACCTTTTGATACCCTTGCCAGGACC AATTAATGCTGAGGATATGGCTGTTACTGGAGCTGGTGCACGCCTTCACGCTCATAATACATCAACCTTGCCATTTTTGTATGAGTTTGAAGAACCAGAG GGAGAGCTGGACTTCCTAACTCGTATAGTGGCAATTACATTTTATCCAGCTGTTTCTGGAAGGAGTCCTCTGACGCTTGGCGAGGTAGAGATCCTTGGAG TTTCTCTTCCATGGAGAGGAGTATTCAGCAATGAAGGCCCTGGTGCAAGAATAACTGAACTTGCCAAAAAAACTCATGAGGAATCCAACCTATTCCTGTC CAGTACCGAAACCAATCCATTTTCCAGCGCTTCTCTATCCAATGATATAACCCCATCAATTCAAAAAAGTGATTCTACAAACTGGCTTGATCTTTTGACT GGAGATGACATGTTTTCTGATCCTCTTTCTCAACCAGTGATGCAGTACGATGTACATGAGGGGAGTGACAACATGTTTTCTCATCCTCTTTCGCAAACAG TAACCCAAAACAATCTACATGAGGAAAATGACTTGCTTGGTTTTTTGGACCAAGCTGTAACTGAACATCGCGGTACCGTAGCTGATGATAAGCTCTCTTC ATCACAAGATAGCAGTGCCCAGAAGTACATCAACTGTCTAAAATTATTTGCAGGGCCACAAATGGGAAAAAAATTGAACTTTGTGGAAGCTATGAGGCTT GAAATTGAAAGACTCCGGCTTAATCTTTCTGCTGCTGAAAGGGATAGAGCTTTGCTACCATTTGGAATTGATCCTGCTATGATAAATCCAAATGTTTTGA TGGATGAATCATATGTGGATAGGTTGTGTAAAGTTTCAAATGCCCTTGCTTTGCTTGGACAAGCTTCTCTGGAAGACAAACTTAATGCTTCTATTGGTCT TGGGACTGTTGACAATAATGTGGTAGATTTCTGGAATGTTAATGGAATTGGGGACCACTGTTCTGGGGGCATGTGTGACGTGCGTGCTGAAACAACAGCA CCTGCACTTGCACCCTCTGCAGTTTCTTCTGTGGGAGCGTCAAAATCTATCTTGCCGTGTTCTGAGTGCAAAAGAAATGTTTGTAAAGTTTGCTGTGCTG GGAGAGGAGCTCTTTTGCTCAATAACTCAGGGGAGGGTGACAGCTCCACTAATCGTTCTGTAACACTGGATAGTGTTGTTTGTAAACAATGTTGCAGTGA TATAGTACTCCATGCTTTGATATTAGACTATATAAGGGTTCTGATTAGCTTGCGAAGAAGAGACCGTTCCAATAGGGCTGCGTGTAAGGCTTTGGACCAG GTTGTAGGGTCTTCCTTGAGGGACTTTGTTCCTGAAAAAAGTCAGTCTTCTAATAATCAGCAAACTGTTGGGATCCTACACCATTTGCTTTCTGGGCTGG AATCACTTGCTGAATTTCCATTCGCTAGTTTCTTACACTTGGTTGAAACAGCAAAAGATTCAGCACCATTTTTGTCATTACTTTCTCCATTGAGTTCTGG ATCACGGCAGTCATACTGGAAAGCTCCTCCAACTGTCACCTCTGTTGATTTTGTTATTGTTCTTGGCACCCTCTCTGATGTCAGTGGAGTTATCTTGCTT GTTAGTCCCTGTGGCTATTCTGTAACTGATGCTCCCACAGTTCAAATCTGGGCCAGCAATAAAATACAGAAGGAAGAAAGGTCATGCATGGGAAAATGGG ATGTCCAGTCCTTGGCCACATCTTCCTCAGAAATTTATGGACCAGAAAAGTCAGGTGCAGAGGATAAAGTACCTAGGCATGTGAAATTTACCTTTAAGAA TCCTGTTAGATGTCGAATCATTTGGATAACACTGCGACTTCAGCGACATGGGTCAAGTTCTGTTAATTTTGAGAAAGACTTCAATCTTTTGTCCCTTGAT GAAAACCCATTTGCACAAGCAAATCGACGTGCCTCTTTTGGTGGAGCAGTTGAAAATGATCCATGTCTTCATGCCCGAAGAATTCTAGTAGCGGGAACTC CAGTGAAAAACGAGACGGGGCTTACATCGCAAAGCCCTGATCAGATGAATTTCAATAGCTGGCTTGATAGGGCTCCACAACTGAGTAGATTCAAGGTTCC AATTGAGGTCGAGAGACTCTTCGACAATGATCTTGTCTTGGAACAGTATTTGCCTCCTGCTTCTCCTTTGCTTGCTGGATTTCGCCTAGATGCTTTCAGT GCAATTAAGCCTCGAGTTAGCCATTCTCCATATTCAGATATTGATATATGGGATACATCAGTCACATTTTTAGAAGACAGGCACATCTCTCCTGCTGTGC TGTATTTACAAGTATCTGCACTCCAGGAACCAAACAACATGGTTATCATTGGTGAATACCGACTACCAGAAGCCAAGGCTGGAACTGCAATGTACTTTGA TTTTCCCAGACAAATACAAACCCGAATGGTTTCGATCAAACTTTTAGGGGATGTTACAGCATTCACAGACGACCCAGCAGAGGTGGACGACTCCAGTACA AGAACTTCACTGGCAGCAGGGTTGTCTCTGGCAAACAGAATTAAGTTATATTACTTTGCTGATCCTTATGAACTTGGGAAATGGGCTAGCCTTTCTGCAA TTTGA
AA sequence Show only first row Show all	>Potri.013G128500.1 pacid=42811269 polypeptide=Potri.013G128500.1.p locus=Potri.013G128500 ID=Potri.013G128500.1.v4.1 annot-version=v4.1 MESPVGGSRLTSVVVATLDSGEVYIIASLSSRTDTQVIYVDPTTGLLRFSGKLGFDVFKSEDEALNYITNGSRWLCRSTTNAKAILGYAALGSFGLLLVA TKLTASIPNLPGGGSVYTVTESQWIKISLQNPQQQGKGEVKSVLELTELDIDGKHYFCETRDITRPFPSRMPLENPDDEFVWNGWFSMPFKNIGLPEHCV TLLQGFAECRSFGSSGQLEGIVALTARRSRLHPGTRYLARGINSCFSTGNEVECEQLVWVPKRTGQSVPFNTYIWRRGTIPIWWGAELKMTAAEAEIYVS DREPYKGSSQYYQRLSKRYDARSSDIAVGEGQKKKPSVLIACINLLRNGTGKSEALLVHHFEKSLSYIKSTGKLPYTRIHLINYDWHASVKLNGEQQTIE GLWKLLKAPTVAVGISEGDYLPSRQRLNDCRGEIIYTDDFAGAFCLRSHQNGVLRFNCADSLDRTNAASYFGALQCFVEQCRRLAISLDSDLTYGYQSVN NYGGYTAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWKHPCPDKPWKRFDMSFEEFKSSTILSPLSQLANLFLLAGDIHATLYTGSKAMHSQILSIFNEEA GKFKQFSVAQNFQITLQRRYKNVLVDSSRQKQLEMFLGLRLFKHLPSVPVQPLNVPSRPSGFFLKPVPNITPSSNGGSSLLSFKRKDLIWVCPQGADVAE LFIYLGEPCHVCQLLLTLSHGADDSTYPSTVDVRTGRYLDGLKLVVEGASIPQCVKGTNLLIPLPGPINAEDMAVTGAGARLHAHNTSTLPFLYEFEEPE GELDFLTRIVAITFYPAVSGRSPLTLGEVEILGVSLPWRGVFSNEGPGARITELAKKTHEESNLFLSSTETNPFSSASLSNDITPSIQKSDSTNWLDLLT GDDMFSDPLSQPVMQYDVHEGSDNMFSHPLSQTVTQNNLHEENDLLGFLDQAVTEHRGTVADDKLSSSQDSSAQKYINCLKLFAGPQMGKKLNFVEAMRL EIERLRLNLSAAERDRALLPFGIDPAMINPNVLMDESYVDRLCKVSNALALLGQASLEDKLNASIGLGTVDNNVVDFWNVNGIGDHCSGGMCDVRAETTA PALAPSAVSSVGASKSILPCSECKRNVCKVCCAGRGALLLNNSGEGDSSTNRSVTLDSVVCKQCCSDIVLHALILDYIRVLISLRRRDRSNRAACKALDQ VVGSSLRDFVPEKSQSSNNQQTVGILHHLLSGLESLAEFPFASFLHLVETAKDSAPFLSLLSPLSSGSRQSYWKAPPTVTSVDFVIVLGTLSDVSGVILL VSPCGYSVTDAPTVQIWASNKIQKEERSCMGKWDVQSLATSSSEIYGPEKSGAEDKVPRHVKFTFKNPVRCRIIWITLRLQRHGSSSVNFEKDFNLLSLD ENPFAQANRRASFGGAVENDPCLHARRILVAGTPVKNETGLTSQSPDQMNFNSWLDRAPQLSRFKVPIEVERLFDNDLVLEQYLPPASPLLAGFRLDAFS AIKPRVSHSPYSDIDIWDTSVTFLEDRHISPAVLYLQVSALQEPNNMVIIGEYRLPEAKAGTAMYFDFPRQIQTRMVSIKLLGDVTAFTDDPAEVDDSST RTSLAAGLSLANRIKLYYFADPYELGKWASLSAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	0	1
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.006G065600 [exp]	1.41	0.7279
AT1G35220			unknown protein		Potri.002G100800 [exp]	2.82	0.7150
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G105600 [exp]	3.16	0.6845
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	6.32	0.6233
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	6.48	0.7116
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	7.93	0.5913
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	8.94	0.6396
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	13.85	0.5986
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	16.43	0.6746
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	17.54	0.5789

Compare expression of checked genes

Potri.013G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.