Plant FIBer expression Database

Potri.013G128600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39740 422 / 6e-150 OLI7, RPL5B OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
AT3G25520 420 / 3e-149 PGY3, ATL5, OLI5, RPL5A RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G099000
[exp]
491 / 4e-177 AT5G39740 461 / 2e-165 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Potri.014G197100
[exp]
454 / 2e-162 AT5G39740 471 / 2e-169 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043388
[exp]
429 / 7e-153 AT3G25520 471 / 2e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10019544
[exp]
428 / 2e-152 AT3G25520 471 / 4e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10020612
[exp]
414 / 1e-146 AT3G25520 467 / 1e-167 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Lus10004874
[exp]
412 / 3e-146 AT3G25520 464 / 1e-166 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00861 Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
CL0267 PF14204 Ribosomal_L18_c Ribosomal L18 C-terminal region
Representative CDS sequence
>Potri.013G128600.4 pacid=42811513 polypeptide=Potri.013G128600.4.p locus=Potri.013G128600 ID=Potri.013G128600.4.v4.1 annot-version=v4.1
ATGGCCTATGCGAAGGCTCAGAAATCTAAGGCCTACTCCAAGAGGTTTCAAGTCAAGTTTAAGAGAAGAAGAGAGGGGAAGACTGACTACAGGGCTAGGA
TTCGACTGATTAATCAGGACAAGAACAAGTACAATACGCCCAAGTATCGATTTGTTGTCCGATTTAGCAACAAGGACATTGTTGCACAAATAACATCAGC
TAGCATTACTGGAGATACTGTCCTTGCTTCTGCTTATGCTCATGAACTTCCTCGATATGGGCTTGAAGTTGGTCTTACAAACTATGCAGCAGCTTACTGT
ACCGGACTTCTCTTGGCTCGCCGCTTGTTGAAAATGCTTGAGATGGATGAGGAATATGAGGGCAATGTTGAGGCCACTGGCGAGGATTTCTCAGTTGAAC
CAGCTGACACCAGGAGGCCATTTCGTGCCCTACTTGATGTTGGGTTAGTCAGAACTACAACTGGAAATCGTGTCTTTGGTGCTCTCAAGGGAGCTCTTGA
TGGTGGTTTGGATATTCCTCACAGTGAAAAGAGGTTTGCTGGCTTTGGAAAGGACAATAAGCAGCTCGATGCTGAAGTTCACCGGAAATATATTTATGGT
GGACATGTTGCAGCATACATGAGGACTTTGATGGAGGATGAACCTGAGAAATACCAGTCTCACTTTAGTGAGTACCTCAAGAGAGAAATTGATGCTGATT
GTATGGAGGCATTGTACAAGAAGGTTCATGCTGCTATTCGTGCAGATCCAACAACCAAGAAATCAGAGAAGGAGCCACTCAAGGAGCACAAGAGGTATAA
CTTGAAGAAGCTAACCTACGAGGAAAGGAAAGAGAAGTTGGTTGAGCGATTGAATACCTTCAACTCAGCTGCTGATGATGAAGATGACGAGTGA
AA sequence
>Potri.013G128600.4 pacid=42811513 polypeptide=Potri.013G128600.4.p locus=Potri.013G128600 ID=Potri.013G128600.4.v4.1 annot-version=v4.1
MAYAKAQKSKAYSKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQITSASITGDTVLASAYAHELPRYGLEVGLTNYAAAYC
TGLLLARRLLKMLEMDEEYEGNVEATGEDFSVEPADTRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFGKDNKQLDAEVHRKYIYG
GHVAAYMRTLMEDEPEKYQSHFSEYLKREIDADCMEALYKKVHAAIRADPTTKKSEKEPLKEHKRYNLKKLTYEERKEKLVERLNTFNSAADDEDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.013G128600
[exp]
0 1
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.002G099500
[exp]
1.41 0.9112
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Potri.002G066200
[exp]
2.44 0.8999 Pt-ARP1.2
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.001G311000
[exp]
2.82 0.8864
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.005G162600
[exp]
3.46 0.8717
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.002G190000
[exp]
5.47 0.8864
AT4G18100 Ribosomal protein L32e (.1) Potri.014G191000
[exp]
10.00 0.8755
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Potri.009G027000
[exp]
10.24 0.8105
AT4G12600 Ribosomal protein L7Ae/L30e/S1... Potri.019G087100
[exp]
10.95 0.8568
AT1G57720 Translation elongation factor ... Potri.004G226300
[exp]
11.95 0.8472
AT5G15610 Proteasome component (PCI) dom... Potri.017G095300
[exp]
14.00 0.8266

Potri.013G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.