Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17680 711 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT3G04240 55 / 3e-07 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32450 46 / 0.0002 Calcium-binding tetratricopeptide family protein (.1) AT3G09490 45 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05150 45 / 0.0003 Calcium-binding tetratricopeptide family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129500 [exp] 646 / 0 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G094050 [exp] 55 / 1e-09 ND / Potri.019G025600 [exp] 50 / 6e-06 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 50 / 7e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 47 / 8e-05 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G001700 [exp] 47 / 8e-05 AT1G76630 1375 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 46 / 0.0001 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G027900 [exp] 46 / 0.0001 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.005G234900 [exp] 44 / 0.0005 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042212 [exp] 1054 / 0 AT1G17680 690 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10017009 [exp] 47 / 0.0001 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 46 / 0.0001 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033182 [exp] 45 / 0.0002 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 45 / 0.0003 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 45 / 0.0003 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13176 [poplar] [flax] TPR_7 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13432 [poplar] [flax] TPR_16 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.013G128900.6 pacid=42812311 polypeptide=Potri.013G128951.1.p locus=Potri.013G128900 ID=Potri.013G128900.6.v4.1 annot-version=v4.1 ATGGAATCGAAAGGAAGTGAAATCGATGAATTTGAAAAGGCATTGGAATCTGCCTTGGATGGAAGCACAGAAGAAGAGGAAGAAGATGAAAACGAAGAAG GAGAATATAGTGATGACGATGAAGAGGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAAATGCTTTGGATTCAATGGAACAAAATCAACA ATTTGAATATGAAGCTCTCGCCGAGAAAAAACGAAAAACACTTGCTGATGCCAAGGGTGAAGGGTCAGCGAAGAAGGCAAGGCAAGAGGACATGACTGGA GCTAGCTTGGCTGAAATAGAGGAGATAATGAATTTTGGTATGCGAAAAAAGAGACGACGACGAATGGTGTTGTTCTTATCCTGTACCTTCATGCAGCCCA AGAGAAGAGGCAGGCGGAAGGGATCAAAAAACAAACTTAGCCCTGAAATTACACGGATGTTGGGTGATGCTACTCTTCACTATGCTCATGGTAATTATGA AGAGGCTTTAACAGTTTTGAGTGAGGTTGTTAAACGAGCACCGCTAGTGGCTGACTCATACCATACACTTGGACTTGTCCATAAAGCCCTTGGAAATACT GAAAAAGCTATGAAATTTTATAGGATTGCTGCATTTCTGAGACCGAAAGATTCATCTTTGTGGAAACTACTTTTTAGCTGGCACGTAGAACAAGGAGACA TAGCTCGAGCATGGAAGTGCCTTTCTAAAGCTATAAGTGCTGATCCTGATGATATTAGTCTAAGATCCCTTCATGCATTATTTTATGATGAACTTGGAGA TCATCAAAGAGCTGCTGAGTCATATGAACAAATTGTTCGAATCTGTCCTGAGGATGTTGAAGCAATAAAGACAGCTGCAAAGATGCACCTCAATTGCGGT CAGATTAAACGATGTGTAGGCATTTTGGAAGATTATCTCAAGGGTCATCCATCTGAAGCTGATTTAAGTGTAATCATTTTGCTGGCTGATGTATTCATGG AAATTGATGCACATAATAATGCTCTTCAGCATATTGAGCATGCTCAGATGATCTACTATTCAGGAAAAGAACTGCCTTTGGAATTAATGATTAAAGCAGG AATCTGCCATGTTTTCCTGGGAAATATTGAGAAGGCAGAGATTCACTTTAGTGCACTACAACAGGAGAATTTCTCCATTCATCCTGAATTCATTACTAAA GTTGCTGATGCATTTATGAGTACTGAGTGTTTTCACTCTGCGTTGAAGTATTATCATATGCTGGAGTTGAATGTTGGAGCTGACAATGAGGGCGAAATCC ATGTGAAAATTGCTCAGTGTTACTTATCCTTGAATGATCGTGCAAAAGCAATTATGTTCTTCTACAAAGCTTTGCCCATGCTCAAAGATAGCATTGATGC CCGAGTGGCTTTGGCGTCGCTCATCCTTGAAGATGCTAAAGAAGATGAGGCTATTTCTTTGCTTTCTCCTCCCAAAGATTTGGATGCAGATTCTCTCGAT TCTAATTCCTACATGCAAAACCCATGGTGGCTTGATGGGAAAATAAAACTAAAGCTTTGCCACATATATAAAGCCAAAGGGATGCTTGAAGACTTTGTTA ATACAATATCACCCTTGGTCCGTGAGTCACTCTATGTAAAAACCCTTCGTCCAAAGGTGAAGAAAAGGCTGACAATAAGTGTTCTGCGTGAAAGAATCAG TATTCTGAATGTTCAGGAAAATGATGATGTTTTTGGAGAAGTGAGACCACTGGCTTCTAAATCAGATCTATTGAGAGCTTGCAGAGCAAGAAAGTTGCTT CAAAAGAAGGAAGAACAGAAAGCAGCTGATAAAGCTGCTGGTATTGATTTGCCTAGTGACTATTCAGATGATGAATCTCTGCTAGAAAACAGAGTTTCTC CTCTGCATGATTTTTTAAAGGACGAAGCGCATCATGATCTTATTATAGATTTGTGCAAGGCATTGCAATCGTTGCAAAGATATTCTGAAGCTCTGGAGAT TATAAATCTCACCCTGAGATTGGTTTCTGATAAACTGCCTGGTGATAGGGAGGAGCAACTTCAGTCTCTTTTAGCTCAAATATCTTTTAACGCCACGGAT CCTAAACATGGTTTTGATTATGTAAGATCTGCTATTCAGAAACAGCCGCACAGCATTGCTGCCTGGAACTGTTATTACAAAATAACCTCAAGATTGGGAA AGAGCCACTCAAAGCATGCCAAATTTCTACGTTACATGCGAAACAAACATAAAAGGTGTGTTCCACCTATAGTCATTTCTGCTCATCAGTTTACCATGCT CAGCCATCATCAAGATGCTGCAAGAGAATACCTAGAAGCTTATAAACTGATGCCAGAATGTCCTCTAATTAATCTGTGTGCGGGAACTGCCTTGATCAAC TTGACCCTTGGATTTAGACTCCAAAATAAGCACCAGTGTCTTGCACAAGGCTTGGCATTCCTCTATAATAATTTACAGCTAACAGAGAATAGCCAGGAGG CATTATATAATATCGCCCGTGCCTATCATCATGTTGGACTAGTGTCTCTAGCAGCTTCATATTATGAAAAGGTGCTTGCAGCTTGCGAGAAGGATTACCC CATTCCGAAACTTCTGAATGAGAATTCAGAAATGGAAAATATGAAACCAGGTTACTGTGACCTGCGCAGAGAATCTGCTTATAATTTGCATTTAATATAT AAAAACAGTGGAGCATTTGATCTTGCTAGGCAGGTCTTGAAAAATCACTGCACTTTCTGA
AA sequence Show only first row Show all	>Potri.013G128900.6 pacid=42812311 polypeptide=Potri.013G128951.1.p locus=Potri.013G128900 ID=Potri.013G128900.6.v4.1 annot-version=v4.1 MESKGSEIDEFEKALESALDGSTEEEEEDENEEGEYSDDDEEEEDDDDEEEEEEEENALDSMEQNQQFEYEALAEKKRKTLADAKGEGSAKKARQEDMTG ASLAEIEEIMNFGMRKKRRRRMVLFLSCTFMQPKRRGRRKGSKNKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKRAPLVADSYHTLGLVHKALGNT EKAMKFYRIAAFLRPKDSSLWKLLFSWHVEQGDIARAWKCLSKAISADPDDISLRSLHALFYDELGDHQRAAESYEQIVRICPEDVEAIKTAAKMHLNCG QIKRCVGILEDYLKGHPSEADLSVIILLADVFMEIDAHNNALQHIEHAQMIYYSGKELPLELMIKAGICHVFLGNIEKAEIHFSALQQENFSIHPEFITK VADAFMSTECFHSALKYYHMLELNVGADNEGEIHVKIAQCYLSLNDRAKAIMFFYKALPMLKDSIDARVALASLILEDAKEDEAISLLSPPKDLDADSLD SNSYMQNPWWLDGKIKLKLCHIYKAKGMLEDFVNTISPLVRESLYVKTLRPKVKKRLTISVLRERISILNVQENDDVFGEVRPLASKSDLLRACRARKLL QKKEEQKAADKAAGIDLPSDYSDDESLLENRVSPLHDFLKDEAHHDLIIDLCKALQSLQRYSEALEIINLTLRLVSDKLPGDREEQLQSLLAQISFNATD PKHGFDYVRSAIQKQPHSIAAWNCYYKITSRLGKSHSKHAKFLRYMRNKHKRCVPPIVISAHQFTMLSHHQDAAREYLEAYKLMPECPLINLCAGTALIN LTLGFRLQNKHQCLAQGLAFLYNNLQLTENSQEALYNIARAYHHVGLVSLAASYYEKVLAACEKDYPIPKLLNENSEMENMKPGYCDLRRESAYNLHLIY KNSGAFDLARQVLKNHCTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	0	1
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	2.23	0.8374
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	2.44	0.8511
AT4G10930			unknown protein		Potri.001G089900 [exp]	3.46	0.8181
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	4.58	0.8365
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	7.14	0.7719
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284600 [exp]	7.34	0.7907
AT5G24350			unknown protein		Potri.012G020000 [exp]	7.48	0.8339
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	8.48	0.8373
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	9.00	0.8278	FCA.3
AT1G24300			GYF domain-containing protein ...		Potri.017G069220 [exp]	9.79	0.8477

Compare expression of checked genes

Potri.013G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.