Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09950 1287 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 570 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 570 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 518 / 9e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 495 / 5e-162 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 499 / 2e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 494 / 7e-160 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 483 / 7e-155 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 485 / 1e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 477 / 8e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129500 [exp] 1674 / 0 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 626 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 589 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 571 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 555 / 2e-180 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G018700 [exp] 535 / 5e-175 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 515 / 5e-168 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 510 / 4e-166 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 512 / 5e-166 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 605 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 546 / 8e-178 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 545 / 9e-178 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 513 / 2e-166 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 502 / 1e-164 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 505 / 3e-163 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 503 / 3e-162 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 506 / 3e-161 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017446 [exp] 494 / 7e-160 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 496 / 4e-159 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G129100.3 pacid=42811096 polypeptide=Potri.013G129100.3.p locus=Potri.013G129100 ID=Potri.013G129100.3.v4.1 annot-version=v4.1 ATGGGTCCTATTCTGAACTCAATTCGCTGCATGCCATCGACAAACCTTTTTATTCGAGGTTTTGCATCTGGAGTGCCTTTTATTGATGCGTGCTTGTTTC GTCTGAAGCAAAAGAAAGAGAGTCTTTCAAACAAAAAAATCTGGACACGCAGCTCAACTATTTTACCACTCAAGCAATCTCCTTCTCTAATCCCATTGAA TGACTTAGTCAATCACTACAAAAGATCATCTCATTCTCACCTGAAAACAGTACCCATTTTCCTAAAAGTCTCGAATTTGGGTTCTTTCGATGATTTGATT GAACATTTAGTTTCTAGTTATAAGCACTCGTGCTGTCCAAAGGATGCAAATTTGTTTCATTTAAATGTTCTTAAACATGGGTTTGATTCTGATTTGTTCC TATGCAACACCCTTATTAATGTGTATGTTAGAATTGGTGATTGTGTTTCGGCACGAAAGTTGTTTGATGAAATGCCGGATAGAAATGGTGTTACGTGGGC TTGTTTGATTTCTGGGTATACTCAGAATGGGATGCCTGAGGATGCATGTGGAGTTTTAAAAGAGATGATTTTTGAGGGTTTTTTGCCTAATCGTTTTGCT TTTGGTAGTGCTATTCGTGCTTGCCAGGAGTCTATGTTATGTGGGCTTCAACTCGGGATGCAAATTCATGGATTGATTTTGAAGTCACCTTATGCAAACG ATGCGTCATTATGTAATGTGCTGATAACCATGTACGGAAAGTATCTGGGATATATTGACTATGCTCGTAGTGTCTTTGATGAGATAGAGATTAGGAATTC TATATCTTGGAATTCAATCGTATCAGTTTACTCACAAAGAGGAGATGCAGCTTCTTGTTTTGAACTATTCTCAAGCATGCAAATGGCAGATTCAGGTTTA AGTCTGAAACCTAATGAATATACATTTGGAAGTTTAATAACTGCTGCTTGTTCTTCCATTGATTCTGGTCTGTCTTTGCTGGGGCAGATACTTGCGAGAA TTAAAAAATCTGGATTACTGGCAAATCTCTATGTGGGGAGTGCTTTGGTTGGTGGGTTTTCAAGGCTTGGGTCGTTTGATTATGCTAGGAAAATTTTTGA GCAGATGACTGCAAGGAATGCTGTCTCTATGAATGGCTTAATGGTTGGTTTGGTCAGACAAAAATGTGGAGAGGAAGCTGTTGAAGTATTCAAGGAGACA AGACACTTGGTTGATATTAATCTTGATTCATATGTGATTCTGTTAAGTGCTTGTGCTGAATTTGCTCTCCTGGATGAAGGGAGAAGAAAGGGTAGAGAGG TTCATGGATATGCAATCCGAACTGGGTTAAATGATGCCAAGGTTGCTGTTGGAAATGGGCTTATTAATATGTATGCTAAATGTGGTGATATTGATCATGC AAGATCAGTATTTGGGCTCATGGTTGATAAGGATTCAGTCTCATGGAATTCCATGATTACTGGTCTTGACCAGAACAAGTGTTTTGAAGATGCAGTCAAG AGCTACAATTCAATGAGGAAAACTGGTTTGATGCCTTCCAATTTCGCTTTGATAAGTGCTTTGAGTTCATGTGCAAGCTTGGGTTGCATTTTGCTGGGAC AACAAACACATGGGGAAGGTATCAAATTAGGACTTGATATGGACGTTTCAGTTTCAAATACCCTTCTTGCATTGTATGCTGAAACTTCACGTCTAGCTGA ATGCCAGAAAGTTTTCTCCTGGATGCTGGATCGTGATCAAGTATCATGGAACATTGTGATTGGGGCATTAGCTGATTCAGGGGCATCGGTTTCTGAAGCT ATAGAAGTTTTCTTGGAAATGATGCGAGCTGGATGGAGTCCTAATAGAGTAACCTTCATAAACTTACTTGCTACCGTTTCATCTCTCTCAACAAGTAAAC TGAGCCACCAGATACATGCTCTAATACTGAAATACAATGTTAAGGATGATAATGCCATTGAGAATGCTCTTCTGGCGTGCTATGGAAAGTCTGGAGAGAT GGAAAACTGTGAGGAAATCTTTTCTAGAATGTCTGAGAGAAGAGATGAGGTTAGTTGGAATTCAATGATTTCTGGATATATACATAACGAACTCCTGTGC AAGGCCATGGATTTGGTCTGGTTAATGATGCAGAGGGGTCAGCGATTGGACTGTTTCACTTTTGCCACTGTTCTTAGTGCTTGTGCCACTGTTGCCACAC TAGAGTGTGGAATGGAAGTACATGCCTGTGCAATAAGAGCTTGTTTAGAATCTGATGTTGTAATTGGGAGCGCACTTGTTGATATGTACTCAAAATGTGG AAGAATAGATTATGCATCGAGATTTTTTAATTTGATGCCTGTGAGGAATTTGTATTCTTGGAACTCAATGATATCAGGCTATGCACGCCACGGGCATGGA GACAATGCTTTGAGGCTTTTCACACGAATGAAGCTCAGTGGTCAATTACCTGATCACATTACCTTTGTCGGGGTGTTGTCTGCTTGTAGCCACATTGGTT TAGTTGATGAAGGGTTTGAATATTTTAAATCCATGACTGAAGTGTATGGACTGGTTCCTCGTGTAGAGCATTATTCATGTATGGTTGATCTTCTTGGACG GGCTGGTGAATTAGATAAGATAGAGAATTTCATTAATAAGATGCCAATTAAGCCTAATATTCTTATTTGGAGAACAGTTTTAGGCGCTTGCTGCCGAGGA AATGGTCGAAAGACAGAATTAGGTAGGAGGGCTGCTGAAATGCTGTTCAATATGGACCCTCAAAATGCTGTGAATTATGTGCTTCTTTCCAACATGTATG CTTCAGGAGGGAAGTGGGAGGACATGGCGAGGACTAGGAGAGCAATGAGAGAGGCGGCGGTGAAGAAGGAAGCTGGATGTAGTTGGGTAACCATGAAGGA TGGTGTCCATGTTTTTGTGGCTGGTGATAACTCACATCCAGAAAAAGGTTTAATCTATGCAAAACTCAAGGAACTTGACAAAAAAATAAGGGATGCAGGA TATGTGCCCCAGATAAAATTCGCACTGTATGATCTTGAACCAGAGAACAAGGAAGAACTCCTGAGCTATCACAGTGAGAAACTTGCAGTTGCTTTTGTTC TCACTCGCAACTCAGGATTGCCTATTAGGATAATGAAGAACCTCAGGGTTTGTGGTGACTGTCACTCTGCCTTTAAATATATATCAAAGGTTGTTGATCG TTCAATAGTGTTACGTGATTCAAACAGGTTTCATCACTTTGAGGATGGTAAATGTTCATGTCTGGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.013G129100.3 pacid=42811096 polypeptide=Potri.013G129100.3.p locus=Potri.013G129100 ID=Potri.013G129100.3.v4.1 annot-version=v4.1 MGPILNSIRCMPSTNLFIRGFASGVPFIDACLFRLKQKKESLSNKKIWTRSSTILPLKQSPSLIPLNDLVNHYKRSSHSHLKTVPIFLKVSNLGSFDDLI EHLVSSYKHSCCPKDANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFA FGSAIRACQESMLCGLQLGMQIHGLILKSPYANDASLCNVLITMYGKYLGYIDYARSVFDEIEIRNSISWNSIVSVYSQRGDAASCFELFSSMQMADSGL SLKPNEYTFGSLITAACSSIDSGLSLLGQILARIKKSGLLANLYVGSALVGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKET RHLVDINLDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVK SYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLDRDQVSWNIVIGALADSGASVSEA IEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLC KAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHG DNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRG NGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAG YVPQIKFALYDLEPENKEELLSYHSEKLAVAFVLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCLDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	0	1
AT5G17910			unknown protein		Potri.019G044500 [exp]	2.00	0.8953
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	3.46	0.8866
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	4.47	0.9000
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	6.00	0.8851
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	6.24	0.8976
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	7.48	0.8852
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	11.22	0.8855
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	12.64	0.8844
AT1G48900			Signal recognition particle, S...		Potri.009G047902 [exp]	14.79	0.7604
					Potri.005G067901 [exp]	14.83	0.8665

Compare expression of checked genes

Potri.013G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.