Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09950 1002 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 404 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 393 / 2e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G09040 377 / 5e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 369 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 367 / 2e-109 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02330 342 / 3e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 337 / 1e-99 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 322 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 314 / 2e-92 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129100 [exp] 1664 / 0 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G128900 [exp] 674 / 0 AT1G17680 711 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.013G058900 [exp] 461 / 6e-142 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 401 / 2e-120 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 395 / 2e-118 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 389 / 2e-117 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 377 / 2e-112 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 369 / 3e-110 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 363 / 1e-106 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 435 / 2e-132 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024220 [exp] 384 / 2e-115 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10002054 [exp] 377 / 3e-113 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009913 [exp] 374 / 7e-111 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042212 [exp] 366 / 2e-108 AT1G17680 690 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10013991 [exp] 354 / 3e-104 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 353 / 8e-104 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10032091 [exp] 348 / 8e-104 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 353 / 1e-103 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 350 / 2e-103 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13432 [poplar] [flax] TPR_16 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.013G129500.3 pacid=42811228 polypeptide=Potri.013G129500.3.p locus=Potri.013G129500 ID=Potri.013G129500.3.v4.1 annot-version=v4.1 ATGTTTCGTTGCTTCTTGAAATCCATCCACAAGAAGCCGTTCTTCCTTAACAATTCAAACCCTTCCGTCACTTTTTCTACTACTGCCTCCCCTCCTCTCC CAAAACCACTGCAGAACAACAAAAACCAACCTCTTCTTCTCTCTAGACCCCAAAACTTCATTTCACCACTCAAGCAATCTCCTTCTCTAATCCCATTGAA TGACTTAGTCAATCACTATAAAAGATCATCTCATTCTCACCTGAAAACAGTACCCATTTTCCCAAAAGTCTCGAATTTGGGTTCTTTCGATGATTTGATT GAACATTTAGTTTCTAGTTATAAGCACTCGTGCTGTCCGAAGGATGCAAATTTGTTTCATTTAAATGTTCTTAAACATGGGTTTGTTTCTGATTTGTTCT TATGCAACACCCTTATTAATGTGTATGTTAGAATTGGTGATTGGGTTTCGGCACGAAAGTTGTTTGATGAAATGCCGGATAGAAATGGTGTTACGTGGGC TTGTTTGATTTCTGGGTATACTCAGAATGGGATGCCTGACGATGCATGTGGAGTTTTAAAAGAGATGATTTTTGAGGGTTTTTTGCCCAATCGTTTTGCT TTTGGTAGTGCTATTCGAGCTTGCCAGGAGTCTATGTTATGTGGGCTTCAACTCGGGATGCAAATTCATGGATTGATTTTGAAGTCACCTTATGCAAACG ATGCGTCATTGTGTAATGTACTGATATCCATGTACGGGAAGTATCTGGGATATATTGACTATGCTCGTAGTGTTTTTGATGAGATAGAGATTAGGAATTC TATATATTGGAATTCAATCGTATCAGTTTACTCACAAAGAGGAGATGCAGCTTCTTGTTTTGAACTATTCTCTAGCATGCAAATGGCAGATTCAGGTTTA AGTCTGAAACCTAATGAATATACATTTGGAAGTTTAATAACTGCTGCTTGTTCTTCCGTTGATTCTGGTCTGTCTTTGCTGGGGCAGATACTTGCGAGAA TTAAAAAATCTGGATTACTGGCAAATCTCTATGTGGGGAGTGCTTTGGCTGGTGGGTTGTCAAGGCTTGGATCGTTTGATTATGCTAGGAAAATTTTTGA GCAGATGACTGCAAGGAATGTTGTCTCTATGAATGGCTTAATGGTTGGTTTGGTCAGACAAAAATGTGGAGAGGAAGCTGTTGAAGTATTCAAGGAGACA AGACACTTGGTTGATATTAATGTTGATTCATATGTGATTCTGTTAAGTGCTTGTGCTGAATTTGCTCTCCTGGATGAAGGGAGAAGAAAGGGTAGACAGG TTCATGGATATGCAATCCGAACTGGGTTAAATGATGCCAAGGTCGCTGTTGGAAATGGGCTTATTAATATGTATGCTAAATGTGGTGATATTGATCATGC AAGATCAGTATTTGGGCTCATGGTTGATAAGGATTCAGTCTCATGGAATTCCATGATTACTGGTCTTGACCAGAACAAGTGTTTTGAAGATGCAGTCAAG AGCTACAATTCAATGAGGAAAACTGGTTTGATGCCTTCCAATTTCACTTTGATAAGTGCTTTGAGTTCATGTGCAAGCTTGGGTTGCATTTTGCTGGGAC AACAACCACATGGGGAAGGTATCAAATTAGGACTTGATATGGACGTTTCAGTTTCAAATACCCTTCTTGCATTGTATGCTGAAACTGGACATCTAGCTGA ATGCCAGAAAGTTTTCTCCTGGATGCTGGAGCGTGATCAAGTATCATGGAACACTGTGATTGGGGCATTAGCTGATTCAGGGGCATCGGTTTCTGAAGCT ATGGATGTTTTCTTGGAAATGATGCGAGCTGGATGGAGTCCTAATAGAGTAACCTTCATAAACTTACTTGCTTCCGTTTCATCTCTCTCAACAAGTAAAC TGAGCCACCAGATACATGCTCTAATACTGAAATACAATGTTAAGGATGCTAATGCCATTGAGAATGCTCTTTTGGCGTGCTATGGAAAGTCTGGAGAGAT GGAAAACTGTGAGGAAATCTTTTCTAGAATGTCTGAGAGAAGAGATGAGGTTAGTTGGAATTCAATGATTTCTGGATATATACATAACGACCTCCTGTGC AAGGCCATGGATTTGGTCTGGTTAATGATGCAGAGGGGTCAGCGATTGGACTGTTTCACGTTTGCCACTGTTCTTAGTGCTTGTGCCACTGTGGCCACAC TAGAGCGTGGAATGGAAGTACATGCCTGTGCAATAAGAGCTTGTTTAGAATCTGATGTTGTAATTGGGAGCGCACTTGTTGATATGTACTCAAAATGTGG AAGAATAGATTATGCATCGAGATTTTTTAATTTGATGCCTATGAGGAATTTGTATTCTTGGAACTCAATGATATCAGGCTATGCACGCCATGGCTATGGA GACAATGCTTTGAGGCTTTTCACACGAATGAAGCTCAGTGGTCAATTACCTGATCACATTACCTTTGTCGGGGTGTTGTCTGCTTGTAGCCACATTGGTT TAGTTGATGAAGGGTTTGAATATTTTAAATCCATGACTGAAGTGTATGGACTGGTTCCTCGTGTAGAACATTATTCATGTATGGTTGATCTTCTTGGACG GGCTGGTGAATTAGATAAGATAGATAATTTCATTAATAAGATGCCAATTAAGCCTAATATTCTTATTTGGAGAACAGTTTTAGGCGCTTGCTGCCGAGGA AATGGTCGAAAGACAGAATTAGGGTTGGTGCTGGTAATTTGGTTTATTGTAATGGAATCGAAAGGAAGTGAAATCGATGAATTTGAAAAGGCATTGGAAT CTGCCTTGGATGGAAGCACAGAAGAAGAGGAAGAAGATGAAAACGAAGAAGGAGAATATAGTGATGACGATGAAGAGGAAGAAGATGATGATGATGATGA AGAAGAAGAAGAAGAAGAAGAAAATGCTTTGGATTCAATGGAACAAAATCAACAATTTGAATATGAAGCTCTCGCCGAGAAAAAACGAAAAACACTTGCT GATGCCAAGGGTGAAGGGTCAGCGAAGAAGGCAAGGCAAGAGGACATGACTGGAGCTAGCTTGGCTGAAATAGAGGAGATAATGAATTTTGGTATGCGAA AAAAGAGACGACGACGAATGCCCAAGAGAAGAGGCAGGCGGAAGGGATCAAAAAACAAACTTAGCCCTGAAATTACACGGATGTTGGGTGATGCTACTCT TCACTATGCTCATGGTAATTATGAAGAGGCTTTAACAGTTTTGAGTGAGGTTGTTAAACGAGCACCGCTAGTGGCTGACTCATACCATACACTTGGACTT GTCCATAAAGCCCTTGGAAATACTGAAAAAGCCATGAAATTTTATAGGATTGCTGCATTTCTGAGACCGAAAGATTCATCTTTGTGGAAACTACTTTTTA GCTGGCACGTAGAACAAGGAGACATAGCTCGAGCATGGAAATCATCAAAGAGCTCTGAGTCATATGAACAAATTGTTCGAATCTGTCCTGAGGATGTTGA AGCAATAAAGACAGCTGCAAAGATGCACCTCAATTGCGGTCAGATTAAACGATGTGTAGGCATTTTGGAAGATTATCTCAAGGGTCATCCATCTGAAGCT GATTTAAGTGTAATCATTTTGCTGGCTGATGTATTCATGGAAATTGATGCACATAATAATGCTCTTCAGCATATTGAGCATGCTCAGATGATCTACTATT CAGGGAAAGAACTGCTTTTGGAATTAATGATTAAAGCAGGAATCTGCCATGTTTTCCTGGGAAATATTGAGAAGGCAGAGGAGAATTTCTCCATTCATCC TGAATTCATTACTAAAGTTGCTGATGCATTTATGAGTACTGAGTGTTTTCACTCTGCGTTGAAGTATTATCATATGCTGGAGTTGAATGTTGGAGCTGAC AATGAGGGCGAAATCCATGTGAAAATTGCTCAGTGTTACTTATCCTTGAATGATCGTGCAAAAGCAATTATGTTCTTCTACAAAGGTGAAGAAAAGGCTG ACAATAAGTGTTCTGCGTGA
AA sequence Show only first row Show all	>Potri.013G129500.3 pacid=42811228 polypeptide=Potri.013G129500.3.p locus=Potri.013G129500 ID=Potri.013G129500.3.v4.1 annot-version=v4.1 MFRCFLKSIHKKPFFLNNSNPSVTFSTTASPPLPKPLQNNKNQPLLLSRPQNFISPLKQSPSLIPLNDLVNHYKRSSHSHLKTVPIFPKVSNLGSFDDLI EHLVSSYKHSCCPKDANLFHLNVLKHGFVSDLFLCNTLINVYVRIGDWVSARKLFDEMPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFA FGSAIRACQESMLCGLQLGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVYSQRGDAASCFELFSSMQMADSGL SLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKKSGLLANLYVGSALAGGLSRLGSFDYARKIFEQMTARNVVSMNGLMVGLVRQKCGEEAVEVFKET RHLVDINVDSYVILLSACAEFALLDEGRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVK SYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQPHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEA MDVFLEMMRAGWSPNRVTFINLLASVSSLSTSKLSHQIHALILKYNVKDANAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLC KAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYG DNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNFINKMPIKPNILIWRTVLGACCRG NGRKTELGLVLVIWFIVMESKGSEIDEFEKALESALDGSTEEEEEDENEEGEYSDDDEEEEDDDDDEEEEEEEENALDSMEQNQQFEYEALAEKKRKTLA DAKGEGSAKKARQEDMTGASLAEIEEIMNFGMRKKRRRRMPKRRGRRKGSKNKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKRAPLVADSYHTLGL VHKALGNTEKAMKFYRIAAFLRPKDSSLWKLLFSWHVEQGDIARAWKSSKSSESYEQIVRICPEDVEAIKTAAKMHLNCGQIKRCVGILEDYLKGHPSEA DLSVIILLADVFMEIDAHNNALQHIEHAQMIYYSGKELLLELMIKAGICHVFLGNIEKAEENFSIHPEFITKVADAFMSTECFHSALKYYHMLELNVGAD NEGEIHVKIAQCYLSLNDRAKAIMFFYKGEEKADNKCSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	2.82	0.9319
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	3.87	0.9197
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	4.24	0.8983
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	4.58	0.9177
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	6.00	0.9185
AT3G45830			unknown protein		Potri.009G026100 [exp]	6.32	0.9172
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	6.63	0.9137
AT1G19290			Pentatricopeptide repeat (PPR)...		Potri.014G040200 [exp]	7.14	0.8986
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	7.21	0.9041
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	7.54	0.8968

Compare expression of checked genes

Potri.013G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.