Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47320 101 / 9e-28 RPS19 ribosomal protein S19 (.1) ATCG00820 52 / 9e-10 ATCG00820.1, RPS19 ribosomal protein S19 (.1) AT4G13850 52 / 3e-09 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT1G04270 44 / 3e-06 RPS15 cytosolic ribosomal protein S15 (.1.2) AT5G09490 43 / 9e-06 Ribosomal protein S19 family protein (.1) AT5G43640 42 / 2e-05 Ribosomal protein S19 family protein (.1) AT5G09510 41 / 2e-05 Ribosomal protein S19 family protein (.1.2) AT5G09500 41 / 4e-05 Ribosomal protein S19 family protein (.1) AT5G63070 39 / 0.0004 Ribosomal protein S19 family protein (.1) AT5G61030 39 / 0.0004 GR-RBP3 glycine-rich RNA-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129100 [exp] 115 / 6e-31 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G101950 [exp] 74 / 3e-18 AT5G47320 74 / 1e-17 ribosomal protein S19 (.1) Potri.017G059000 [exp] 70 / 4e-16 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 60 / 3e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 59 / 7e-12 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.011G074301 [exp] 54 / 1e-10 ATCG00820 168 / 2e-56 ribosomal protein S19 (.1) Potri.005G154674 [exp] 54 / 2e-10 ATCG00820 167 / 9e-56 ribosomal protein S19 (.1) Potri.013G137688 [exp] 54 / 2e-10 ATCG00820 169 / 1e-56 ribosomal protein S19 (.1) Potri.019G013302 [exp] 43 / 3e-06 ATCG00820 109 / 7e-33 ribosomal protein S19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027711 [exp] 111 / 2e-32 AT5G47320 123 / 3e-36 ribosomal protein S19 (.1) Lus10003009 [exp] 112 / 1e-29 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10022551 [exp] 62 / 4e-13 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 58 / 2e-11 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 56 / 9e-11 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 50 / 2e-08 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10008692 [exp] 44 / 2e-06 AT5G09490 162 / 2e-52 Ribosomal protein S19 family protein (.1) Lus10026127 [exp] 44 / 4e-06 AT5G09500 244 / 4e-84 Ribosomal protein S19 family protein (.1) Lus10021886 [exp] 44 / 1e-05 AT5G09500 244 / 1e-81 Ribosomal protein S19 family protein (.1) Lus10041168 [exp] 42 / 4e-05 AT5G09510 260 / 6e-89 Ribosomal protein S19 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00203 [poplar] [flax] Ribosomal_S19 Ribosomal protein S19
Representative CDS sequence Show only first row Show all	>Potri.013G129600.2 pacid=42811897 polypeptide=Potri.013G129600.2.p locus=Potri.013G129600 ID=Potri.013G129600.2.v4.1 annot-version=v4.1 ATGGCATTTTGTAACAAATTTGGGAGCTTGGTGAGGCAGAGCATATACCAAAATGGGCAAGTTCTAATGGGTCCTATGCTGAATTCAATTCGCTGCATGC CATCGACAAACCTTTTTATTCGAGGTTTTGCATCCGGAGTGCCTTTTATCGATGCGTGCTTGTTTCGTCTGAAGCAAAAGAAAGAGAGTATTTCAAACAA AAAAATCTGGACACGCAGATCAACTATTTTACCGGAATACATTAATAATTATGTACGAATTTACAATGGAAAAACTTTTGTTCGTGTTAAGATCACTGAA GGGAAGGTTGGTCATAAATTTGGAGAGTTTGCTTTTACACGAAAAGGAAGAGTTAAGACAGCTCTTGTGAAAGGAAGAGGTAAGACAAAGAAGTAG
AA sequence Show only first row Show all	>Potri.013G129600.2 pacid=42811897 polypeptide=Potri.013G129600.2.p locus=Potri.013G129600 ID=Potri.013G129600.2.v4.1 annot-version=v4.1 MAFCNKFGSLVRQSIYQNGQVLMGPMLNSIRCMPSTNLFIRGFASGVPFIDACLFRLKQKKESISNKKIWTRRSTILPEYINNYVRIYNGKTFVRVKITE GKVGHKFGEFAFTRKGRVKTALVKGRGKTKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.013G129600 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	1.41	0.8999
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.008G053601 [exp]	3.46	0.8813
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	4.24	0.8749
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014386 [exp]	5.29	0.8505
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	5.47	0.8693
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Potri.001G391400 [exp]	6.48	0.8342	Pt-IE.1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	7.48	0.8709
AT3G15351			unknown protein		Potri.002G142000 [exp]	8.48	0.8628
AT5G63480			unknown protein		Potri.012G099200 [exp]	8.94	0.8458
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.018G011300 [exp]	10.19	0.8494

Compare expression of checked genes

Potri.013G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.