Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 691 / 0 Protein kinase superfamily protein (.1) AT1G03740 583 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 538 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G54610 509 / 2e-173 Protein kinase superfamily protein (.1.2.3) AT1G09600 503 / 2e-169 Protein kinase superfamily protein (.1) AT1G71530 492 / 2e-168 Protein kinase superfamily protein (.1.2) AT5G50860 486 / 1e-164 Protein kinase superfamily protein (.1) AT1G74330 486 / 7e-163 Protein kinase superfamily protein (.1.2) AT1G33770 479 / 2e-161 Protein kinase superfamily protein (.1) AT1G57700 481 / 8e-161 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119400 [exp] 759 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 753 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 546 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 537 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 522 / 2e-178 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G003700 [exp] 526 / 3e-178 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 521 / 4e-178 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 521 / 6e-178 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 515 / 1e-175 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033684 [exp] 855 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 825 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10018601 [exp] 775 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 770 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 718 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 635 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 530 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 528 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 530 / 1e-179 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 525 / 1e-179 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G130000.1 pacid=42811941 polypeptide=Potri.013G130000.1.p locus=Potri.013G130000 ID=Potri.013G130000.1.v4.1 annot-version=v4.1 ATGGGTTGTATTGCTTCTAAGGAAAATAGCCAAGATGGTCATAGAGAGAGGCTATCTCGTAAAGGATCATTAGATAGGCGAGTTTCCCATGTCAATTCTC TAAGAACAGATGACGGAGTTCGATCAAAGGATAAACGTCATAGTGGAGATGTGAAGGTTATGTTAACGGATAAGAAAACAAGAGGTTCAAGGAGGTACCA TGGTGATCAGATTGAGAAAAGGCGAGTTGAGAATCAAATTGAGAAGAATATGGTCGAGAATTATGAAGTTGATGCTTTTTGTCAAACTCAGATTGAGAAA AGGAAGATGGAAGTTTTCCAAGATTTTTCAATTCTTAGTCATCCAGCGTGGGGGAAGGTGCCAAAGTGCGTGGAAGCTGAGCAGGTTGCGGCTGGATGGC CTTCTTGGCTTGCCTCGGCAGCAGGAGAAGCTATTAGAGGATGGGTGCCACGGCGTGCCAATACTTTTGAGAAGTTAGATAGAATTGGACAAGGAACATA TAGTAATGTCTACAAGGCTCGTGATGTCACACATGATAAAATTGTTGCTATTAAAAAAGTCCGGTTTGATAGTGGTGATCCAGAGAGTGTCAAATTCATG TCCCGTGAGATTCTTATTTTGCGTGGGCTGGATCATCCCAATATAATCAAACTGCAAGGCTTGATAACTTCCCAGACATCTTCCAGTTTGTACCTTGTCT TTGAGTACATGGAACATGATCTTACAGGACTTGCTGCACTTCCTGGCATGAAGTTCACTGAAGCACAGATCAAATGTTACATGCAGCAGCTTTTAACTGG ACTTGATCACTGTCATAGTCACGGTGTTCTGCATCGTGATGTAAAGGGTTCAAATCTTCTTATTGATGACAATGGCATCTTGAAGATTGCAGATTTTGGC TTAGCAAGTTTCTTTGATCCTCGAAGTAGTGCTCAATTGACAAGCCGTGTGGTGACTCTTTGGTATAGAGCACCGGAACTTTTACTTGGAGCCTCTCGCT ATGGAGCTGCTGTTGATTTATGGAGTGCGGGTTGCATACTTGGGGAGCTATACTCCGGCAGACCTATTTTGCCAGGAAGAACAGAGGTTGAGCAATTGCA CAAGATTTTTAAGCTGTGTGGCTCACCCTCTGAGGATTACTGGATAAAAACAAAGTTGCCTCGTTCATCAGTAATCAAGCCTCAACGACCATATAGACGA AGTGTGAAAGAAACATTCAAAGACTTTCCTGCTCCTGCTGTTGGCCTTATGGAAAACTTGCTTTCCATGGACCCAGCTTATCGAGGAACTGCAGCTTTTG CTCTCACCACTGAGTTTTTTACAACAAAACCATTTGCTTGTGATCCATCAAGTTTGCCCAAATACCCCCCCAGCAAAGAGATCGATGCAAAACTACGGGA TGAAGAAGCTCGAAGGCAAGAAGCAGTTGCAAGGAGAAGTGGACCAAAAGAATCTCTTGCACCTAATGGCCATCCTGATTTGCCCTTGTCCCTGCAGAAG AAACACAATTCTGTTTCACAAAATAGTGGCAAGATGGTCAACTCTCACAAGGAGCAAACTGTATCTGGTTTCATGATTGATCCCTCTGAACAAAGGCAAG CTGTAAGAGAAGGGAGAGGAGATTTCATGGAGCATCAACGTAAGAAAGTTTCACATTCGGGGCCATTAGTCCAAGGGAATGGCTGGACAAGGACTGGAAA GAATTTTGATAATCATAATATGGTATCAGGCAGGCATAACCTATCAACAATATCTGGTTTAGTAGCAACTAGAACTATCTTGCCTGGAGATCACCAAAAG AAACCTGGGGTGCCACAGCCAGAAGTGGTAAACCAAGTAGGCAGGCTTCAGGGATCATTAAACGGATTGGAGTCCTCAAGAAAGGTGGACCAAAATTGTC AAATAAAGAAGATGGGAGATTCTCCTCAGGCAGGAGCTGGAAAATCCAGTAACAAGGAACCGAGTCTGCATGGCCATGGTCCCAAGGGAAACAAGATTTA CGTCTCTGGTCCATTACTCGCTCCATCAAACAATGTGGAACAAATGCTCAAAGAGCATGACCGCCAGATCCAAGAATATGCCCGAAAGCGGCTCGACAAG ACAAAACTTGCGAAGTTGAAAGCCCGAGGGAAGCAACCAACGGATAGTTTGATGGCTACCTCTAGGCATCGAGGAGAATAA
AA sequence Show only first row Show all	>Potri.013G130000.1 pacid=42811941 polypeptide=Potri.013G130000.1.p locus=Potri.013G130000 ID=Potri.013G130000.1.v4.1 annot-version=v4.1 MGCIASKENSQDGHRERLSRKGSLDRRVSHVNSLRTDDGVRSKDKRHSGDVKVMLTDKKTRGSRRYHGDQIEKRRVENQIEKNMVENYEVDAFCQTQIEK RKMEVFQDFSILSHPAWGKVPKCVEAEQVAAGWPSWLASAAGEAIRGWVPRRANTFEKLDRIGQGTYSNVYKARDVTHDKIVAIKKVRFDSGDPESVKFM SREILILRGLDHPNIIKLQGLITSQTSSSLYLVFEYMEHDLTGLAALPGMKFTEAQIKCYMQQLLTGLDHCHSHGVLHRDVKGSNLLIDDNGILKIADFG LASFFDPRSSAQLTSRVVTLWYRAPELLLGASRYGAAVDLWSAGCILGELYSGRPILPGRTEVEQLHKIFKLCGSPSEDYWIKTKLPRSSVIKPQRPYRR SVKETFKDFPAPAVGLMENLLSMDPAYRGTAAFALTTEFFTTKPFACDPSSLPKYPPSKEIDAKLRDEEARRQEAVARRSGPKESLAPNGHPDLPLSLQK KHNSVSQNSGKMVNSHKEQTVSGFMIDPSEQRQAVREGRGDFMEHQRKKVSHSGPLVQGNGWTRTGKNFDNHNMVSGRHNLSTISGLVATRTILPGDHQK KPGVPQPEVVNQVGRLQGSLNGLESSRKVDQNCQIKKMGDSPQAGAGKSSNKEPSLHGHGPKGNKIYVSGPLLAPSNNVEQMLKEHDRQIQEYARKRLDK TKLAKLKARGKQPTDSLMATSRHRGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.006G202200 [exp]	1.00	0.9295	SYP121.2
AT1G35710			Protein kinase family protein ...		Potri.014G195100 [exp]	1.41	0.9243
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	3.46	0.9207
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	4.58	0.9013
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.014G035700 [exp]	4.58	0.8845	ADR1.2
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	4.89	0.9163
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.010G147700 [exp]	6.00	0.8886
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	6.32	0.9120
AT2G17705			unknown protein		Potri.005G107700 [exp]	6.48	0.8880
AT2G24300			Calmodulin-binding protein (.1...		Potri.018G111200 [exp]	9.00	0.8493	Pt-CBP60.8

Compare expression of checked genes

Potri.013G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.