Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 662 / 0 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 620 / 0 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 375 / 4e-127 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 359 / 4e-121 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 347 / 1e-116 Glycosyl hydrolase superfamily protein (.1) AT3G10900 331 / 2e-110 Glycosyl hydrolase superfamily protein (.1) AT1G02310 321 / 2e-106 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 242 / 1e-76 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009400 [exp] 416 / 1e-142 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 381 / 4e-129 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 375 / 6e-126 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 364 / 6e-123 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 360 / 2e-121 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 357 / 3e-120 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 318 / 4e-105 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 232 / 3e-74 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 204 / 5e-62 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031650 [exp] 687 / 0 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 681 / 0 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 659 / 0 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 647 / 0 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10027329 [exp] 418 / 6e-144 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039032 [exp] 410 / 7e-141 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 387 / 1e-131 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 377 / 6e-128 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 367 / 1e-120 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 332 / 4e-110 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.013G130400.1 pacid=42811382 polypeptide=Potri.013G130400.1.p locus=Potri.013G130400 ID=Potri.013G130400.1.v4.1 annot-version=v4.1 ATGCAGAAAATGGTAGCAGGAAATGGGCTACTTTACCCGATTTTAGGTTTTGCATCATGTGTGGCTTTCATTTACATGTCTTTTGGTGGTTTTATACTCA CCAACCATCGAGAACACAGGGAGCTAAGTTTTGTGGAGAGAAATGGGACTCAGTTTATGGTGGATGGCAGGGCTTTTTACATTAACGGATGGAATTCTTA TTGGTTGATGGATCATTCTGTCGATGAAGATAGGAAACCTAGAGTTGGTGCAATGCTGGAAGCTGGTGCCAAGATGGGTCTCACTGTTTGCAGAACTTGG GCATTTAATGATGGTGGCTACAACGCACTCCAGGTCTCCCCTGGTAGATTCGATGAGCGGGTCTTAAGGGCTTTGGATTATGTTATTGCAGAAGCCAGAC AACATGGAGTCAGACTACTACTTAGTTTAGTCAACAACTTAAAGGCATATGGTGGAAAGACTCAGTATGTGAATTGGGCATGGGAGGAAGGCATTGGTTT GAGCTCGTCAAATGATTCTTTCTTCTTTGATCCATCCATCAAAAGATATTTCAAGCATTATGTAAAGACTTTGTTGACCAGGAAAAACACCATCACAGGG ATTGAATATAGGAATGATCCTACCATATTTGCATGGGAGTTGATGAATGAGCCCCGTTGCATGTCTGATCCTTCAGGTGACACTCTTCAAGATTGGATAG AAGAAATGTCAGCTTTCGTGAAAACAATTGACACGAACCATCTTCTAACAGTGGGCCTGGAAGGTTTTTATGGTCCTAAAAATCCCAAAAGGTTAACTGT GAACCCAGAATCTTGGGCATCAAGCCTTGGATCTGATTTTGTTCGCAACTCCAAAGCGCCTGCCATTGACTTTGCCTCTGTTCATATATACCCTGATCAT TGGTTTCCTCATCAAGAATTTGAAGATAAACTGAAATACGTCTCCAAGTGGATGCTTTCACACATTGAAGATGGTCACTATGAGCTAAATAAACCTGTCT TCTTCACTGAATTTGGTTTGTCCAACCTGAACAAGGACTTCCAGCCATCTCAACGGGATCGATTTTACAAAACCATTTTTGACATCATATATAAATCTTC AAAGAGAAAGCGGGCTGGGGCAGGTGCTTTGATCTGGCAGTTGTTTGTTGAAGGAATGGACGACTTTAATGATGATTTTGGGATTGTTCCATGGGAAAGG GAATCAACAAACAGAATACTGACTGATCAATCATGTAGATTGGCCAGAATCCATGGAATTTCTCCACAAAATAAATATTTGAAAGAATTGTGTTTGCAGA GGCAGTGA
AA sequence Show only first row Show all	>Potri.013G130400.1 pacid=42811382 polypeptide=Potri.013G130400.1.p locus=Potri.013G130400 ID=Potri.013G130400.1.v4.1 annot-version=v4.1 MQKMVAGNGLLYPILGFASCVAFIYMSFGGFILTNHREHRELSFVERNGTQFMVDGRAFYINGWNSYWLMDHSVDEDRKPRVGAMLEAGAKMGLTVCRTW AFNDGGYNALQVSPGRFDERVLRALDYVIAEARQHGVRLLLSLVNNLKAYGGKTQYVNWAWEEGIGLSSSNDSFFFDPSIKRYFKHYVKTLLTRKNTITG IEYRNDPTIFAWELMNEPRCMSDPSGDTLQDWIEEMSAFVKTIDTNHLLTVGLEGFYGPKNPKRLTVNPESWASSLGSDFVRNSKAPAIDFASVHIYPDH WFPHQEFEDKLKYVSKWMLSHIEDGHYELNKPVFFTEFGLSNLNKDFQPSQRDRFYKTIFDIIYKSSKRKRAGAGALIWQLFVEGMDDFNDDFGIVPWER ESTNRILTDQSCRLARIHGISPQNKYLKELCLQRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Potri.013G130400 [exp]	0	1
AT5G54530			Protein of unknown function, D...		Potri.001G410300 [exp]	5.29	0.7158
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	6.63	0.8107
AT3G03440			ARM repeat superfamily protein...		Potri.004G088800 [exp]	6.92	0.7074
AT2G36210			SAUR-like auxin-responsive pro...		Potri.006G211000 [exp]	7.93	0.7955
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.008G026400 [exp]	8.48	0.7980	Pt-MANS.1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	12.84	0.7660	MANS.2
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	14.00	0.7870
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.007G140400 [exp]	17.94	0.6920
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	22.04	0.7337
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	22.44	0.7364

Compare expression of checked genes

Potri.013G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.