Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 330 / 3e-105 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62680 315 / 1e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 314 / 4e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 312 / 2e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 312 / 3e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 311 / 5e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 309 / 3e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 304 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 304 / 9e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 305 / 1e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117600 [exp] 580 / 0 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G068400 [exp] 506 / 7e-178 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G047400 [exp] 392 / 4e-132 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 394 / 3e-131 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 392 / 2e-130 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 391 / 2e-130 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 390 / 4e-130 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 390 / 1e-129 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 388 / 2e-129 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022861 [exp] 333 / 4e-108 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 333 / 7e-108 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 329 / 4e-105 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 320 / 1e-101 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 300 / 6e-96 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 301 / 2e-95 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 299 / 1e-94 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 297 / 7e-94 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021074 [exp] 281 / 2e-90 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014247 [exp] 275 / 2e-85 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G130600.4 pacid=42812450 polypeptide=Potri.013G130600.4.p locus=Potri.013G130600 ID=Potri.013G130600.4.v4.1 annot-version=v4.1 ATGACGGCTATGTCTCGAGCAACTGGTTTGCTTACTAAAAACCCAATATTTCGTCTTCAACAGCAAATGGGTATGCCCTTCTTTTCCTCATTTCCCTTCT CTACTGCTTGCAGTAGCAGCGGCACTGATAAGGTGTCCTTTAGTAACATTGATGATGGCTTAGCTTTTTTCAATGACATGCTTAGCAAGAACCCTCGGCC TAGTACTTATGATTTTAATCAGTTACTGTCTGCAGCTATGAGGATGAAAAAACATGAGACAGTAGTTTCATTGTCCAAAGAAATGGAACTTAGAGGAGTT AAACATAATGTCTTCACGCTCACCATATTGATTAACTGTTTCTGTCACTTAAACCGTGTTGATTTTGGATTCTCTGTGTGGGGAAAAATTCTTAAACGTG GTTTTGAGCCGGATGTTGTAACGTCTACTACCTTGGTAAATGGGCTCTGTAAAGAAGGTAAAATGGGTGAAGCTGTGAAATTGGTTGATGATATGGTGGA AAGAGGGTATAGACCTGGTGCATATACTTATAGTGTGGTAATAAATGGTCTTTGTAAAGTTGGGAAAGCTGATGTGGCTGTTGGATATCTTGAGGAAATG GAAAAGCTAAGTTGTGTGCTGGATACTGTTGCTTACAATTCGGTGATTGAGGGATATTGTTTGCAAGGAAAAGTAGATGGAGCTAGAGAGGTATTTGATG TGATGGTGAGTAAGGGCACTACGCATGATGTTTGTAATTATAACACCTTGCTTAATGGATATTGTAAGATGGAAAGGATAGACGAGGCAATGCAAGTTTT TGATGAAATGTTGAGAGAAGGTTTAGTTCCTACTGTAGTTACTTACAATACTCTGATAAAAGGTTTGTGTCGAGTGCGGAGACCTTGGGCTGCACATCAG CTTTTCAGGAACATCTCTGCTTGTGGCCTCACTCCAACCATAATAACTTACTCGACTTTGATTGATGGTTTCTGTGAACAAGGGAATCTTGATGAGGGGT GGGCACTATTTCAAGAGATGCAAAAGAGTGCTGTGAAGCCTAACTTGGTAGTCTACACCATCCTTATTGATGGTATGTGCAAGTGTGGGAAGCTTAAGGA TGCAAAGGTATTGTTTTCTAGACTCATCGTGGAAGGATTTCAGCCTGATGTTCATACCTACACTGTGTTAATTGGTGGAATTTGTAAAGAAGGATCTCTA ATTGAAGCACTCAAACTTTTTAGAAAAATGGAAGAGGACGGCTGCACACCAAATGCTTGCTCCTATAATGTGATTATCCAAGGATTTCTCCAACACAAGG ATACATCAACAGCAATGCAGCTTATCTGTGAAATGGTCAATCGGGGATTCTCTACAGATGCTGCCACCAGAACCTTGCTGCTAGGTCTACCCACCAATGA TGGGAGTCCTGCTCTTAAAAATTTGCCAGGGCTCTGTGATGATCATCAAGATGTAAAGGGTTGTGATGCTTCAGTCTTCATGAATGATGATGATGCTCTT GCACTTGCCACCAAATAA
AA sequence Show only first row Show all	>Potri.013G130600.4 pacid=42812450 polypeptide=Potri.013G130600.4.p locus=Potri.013G130600 ID=Potri.013G130600.4.v4.1 annot-version=v4.1 MTAMSRATGLLTKNPIFRLQQQMGMPFFSSFPFSTACSSSGTDKVSFSNIDDGLAFFNDMLSKNPRPSTYDFNQLLSAAMRMKKHETVVSLSKEMELRGV KHNVFTLTILINCFCHLNRVDFGFSVWGKILKRGFEPDVVTSTTLVNGLCKEGKMGEAVKLVDDMVERGYRPGAYTYSVVINGLCKVGKADVAVGYLEEM EKLSCVLDTVAYNSVIEGYCLQGKVDGAREVFDVMVSKGTTHDVCNYNTLLNGYCKMERIDEAMQVFDEMLREGLVPTVVTYNTLIKGLCRVRRPWAAHQ LFRNISACGLTPTIITYSTLIDGFCEQGNLDEGWALFQEMQKSAVKPNLVVYTILIDGMCKCGKLKDAKVLFSRLIVEGFQPDVHTYTVLIGGICKEGSL IEALKLFRKMEEDGCTPNACSYNVIIQGFLQHKDTSTAMQLICEMVNRGFSTDAATRTLLLGLPTNDGSPALKNLPGLCDDHQDVKGCDASVFMNDDDAL ALATK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	0	1
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	2.44	0.9104
					Potri.009G168700 [exp]	2.82	0.9043
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	5.00	0.9177
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	10.95	0.9128
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	17.54	0.7818
AT1G60560			SWIM zinc finger family protei...		Potri.006G245800 [exp]	17.94	0.7788
AT4G02210			unknown protein		Potri.005G252500 [exp]	20.97	0.8559
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	26.07	0.8674
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	26.94	0.7179
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	28.63	0.7757

Compare expression of checked genes

Potri.013G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.