Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28310 120 / 8e-34 unknown protein AT1G52270 47 / 8e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031649 [exp] 172 / 6e-54 AT4G28310 149 / 2e-45 unknown protein Lus10033688 [exp] 162 / 4e-50 AT4G28310 156 / 3e-48 unknown protein Lus10018597 [exp] 147 / 2e-44 AT4G28310 154 / 2e-47 unknown protein Lus10039832 [exp] 146 / 7e-44 AT4G28310 156 / 2e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G130700.2 pacid=42810742 polypeptide=Potri.013G130700.2.p locus=Potri.013G130700 ID=Potri.013G130700.2.v4.1 annot-version=v4.1 ATGGTAGTTCCTTTAGGCCCTGGAAAATTCTATGGCAGCACCCTCCCTCGCCCCAGAATCTACACCGATGTAAGGCACAGCGCTGAACGAGTAGACCCGC CAGCTCCTGTTATGGATCCGTTTCTTTCATGGGCTCATGAAGCTCACTGGTCCATGGGAGGGCTCAGTTTCAACCGCCTTCGATATCAGGGTCGAATCGA AGGAAATACTGAGAAACTACGAAAACTCCGCGAAAAAAAAATCAAGTTATTAGCCAAAACTAGCCCGAAGAAGAAAGATTTGGCCCCGGATGGGCAGAAA GAGCGCAATAATAAAAGGGGTGGGTCTGTCTCGCCTCCTCCAGCTCCTCAAGTGACAAAGAAGAGGAGGTTCTTGCAGTTGATTGACGAGGAGGAGAGTG AAGAAGAGGAGGATCAAGAATTTGAGGAAACTGTGAAGATTAAAAGGGGTCTAGCAAGGAAGTTAGTGGGTGATTTTGAAAGGGTAGCTAAGGATAATCA CAATGTGAAGGTTGCTGATTTGGCAAAGACGGTCACTGAGGAGGTTAGCAGAGAGGAAAAGAAATCAAGGGGTGGAAAGAAAGGTAAGAAAAGTGGTGGA GAGAGTGGATCCGAGGCTGTTATTGGCGGAATTAGGAGTTCACCAAGATTGGCTAAGCAAAGATATGTGAAAGAGGCTTAA
AA sequence Show only first row Show all	>Potri.013G130700.2 pacid=42810742 polypeptide=Potri.013G130700.2.p locus=Potri.013G130700 ID=Potri.013G130700.2.v4.1 annot-version=v4.1 MVVPLGPGKFYGSTLPRPRIYTDVRHSAERVDPPAPVMDPFLSWAHEAHWSMGGLSFNRLRYQGRIEGNTEKLRKLREKKIKLLAKTSPKKKDLAPDGQK ERNNKRGGSVSPPPAPQVTKKRRFLQLIDEEESEEEEDQEFEETVKIKRGLARKLVGDFERVAKDNHNVKVADLAKTVTEEVSREEKKSRGGKKGKKSGG ESGSEAVIGGIRSSPRLAKQRYVKEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28310			unknown protein		Potri.013G130700 [exp]	0	1
AT2G14660			unknown protein		Potri.009G085700 [exp]	24.67	0.6852
AT5G59970			Histone superfamily protein (....		Potri.007G012500 [exp]	25.09	0.7165
AT4G37660			Ribosomal protein L12/ ATP-dep...		Potri.004G224300 [exp]	36.05	0.7145
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	45.89	0.6815	RAB11.3
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.011G072400 [exp]	49.56	0.6958	RPL18.5
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	50.49	0.6564
AT5G27820			Ribosomal L18p/L5e family prot...		Potri.007G100900 [exp]	54.49	0.6831
AT2G45860			unknown protein		Potri.002G158300 [exp]	56.99	0.7077
AT5G61170			Ribosomal protein S19e family ...		Potri.015G056100 [exp]	61.35	0.7073
AT5G28060			Ribosomal protein S24e family ...		Potri.013G036100 [exp]	69.57	0.6941	Pt-RPS24.2

Compare expression of checked genes

Potri.013G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.