Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15355 334 / 9e-108 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53025 322 / 7e-104 Ubiquitin-conjugating enzyme family protein (.1) AT1G53023 294 / 5e-96 Ubiquitin-conjugating enzyme family protein (.1) AT2G33770 283 / 1e-85 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT2G16920 277 / 2e-82 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT5G41700 65 / 2e-12 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 64 / 6e-12 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 64 / 8e-12 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 63 / 1e-11 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08690 62 / 3e-11 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G400300 [exp] 373 / 2e-122 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 363 / 2e-118 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G043500 [exp] 292 / 1e-88 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.011G052600 [exp] 290 / 8e-88 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.010G146500 [exp] 261 / 1e-82 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.009G136000 [exp] 277 / 4e-82 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.008G104400 [exp] 258 / 3e-81 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G176000 [exp] 270 / 1e-79 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 153 / 5e-42 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018596 [exp] 444 / 2e-152 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10039831 [exp] 441 / 3e-151 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 324 / 9e-105 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10034472 [exp] 293 / 6e-90 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10001214 [exp] 285 / 6e-89 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10005854 [exp] 288 / 1e-87 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10025070 [exp] 287 / 3e-86 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 271 / 8e-85 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10037778 [exp] 254 / 2e-80 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 231 / 9e-72 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G130800.4 pacid=42811418 polypeptide=Potri.013G130800.4.p locus=Potri.013G130800 ID=Potri.013G130800.4.v4.1 annot-version=v4.1 ATGGATCTCGACATGGCTGATGGTAACCAGGACGTTGCGATCTCAAAGAAACTTAAACAAAGCGAGGTTGTTCTATGTGATGTAATGGATGCTCAAGCTG AAGTTTTGATATGCCATGGAAAAGCTGATATGGGCACCAAGGGAAAATCAAAATCTGTTCATGATGATGCATGGCAACAAGACATTAAGAATGCTTCCTC CAGTGATCTTGGCAATTATACCAGTGTAGCAGGATCAGTGGATAGTGCTTATCATCTCAGGGGTTCAACTTCTGGATCAACTAATTCAAACAATAATAAT GGTTCCAATTCTGACATGTCATACCATGATGATGAGGTTGGCAATGATTGTGATGATTATGCTGATGAAAATGATTGTGATGACCATGATGGCTATTTAT ATTATGATGATGAAGATGAAGATGATTATTCAGCCATCCAATCTCAATTTGATAACGTGGATCTTCCTCCTGGAGTAGAGGCAACCCTTCCTTGGCTGAA GGAACCAGCTTCGAGTTCAAATATGATATCCAATACCAGCACCTCAACTATTCCTAATCATACTATTCCTAGTCATACTAATCATAATCATTCCGAGAGC AAAATTATGACAACCACTTGTCTATCTGAAAACAAATGGACTGCTTCTGCAAGTAGTTCGATGTTTCCTGCAGATTCAAGCTCTAATGGTGAAGTAGAAG ATAGCGGAGAAAACAATACCATGCAAAAGTATAGGAACTTTAAACAATTTGATAATGTGGAAGACTTTTCTGATCATCACTATAGGGGCACCAGTGTCTC TGACCTCCCGCCTCCCAAAATTTGGGCGAAAAGAATTCAGGATGAATGGAAAAGTTTGGAGAAAGACTTACCAGATACTATATTTGTTAGAGTTTATGAA ACAAGGATGGAACTTTTGAGGGCTGTCATTGCAGGACCTGCTGGCACTCCCTACCATGATGGCCTTTTTGTCTTTGACTGTATATTCCCTCCTACATATC CTGATGCACCACCGATGGTATACTACTATTCAGGTGGGCTTCGATTGAATCCAAATCTGTATGAATGTGGAAAAGTCTGCCTCAGCCTTTTGGGCACCTG GTCTGGCAAAGAGACTGAGATGTGGATCCCAGGGAAATCAACCATGCTGCAAGTTTTGGTCTCAATACAAGCCCTCATTCTAAATGCAAAACCTTTCTTT AATGAGCCTGGGTATGAATCTTCATATGTGGGGGCTGAAGGGGATAAAAGATCTAAGAAATACAATGAAGAGGTGTTCATTTTGTCCTTGAAGACAATGA TGTATACTCTACGAAGGCCACCAAAGCATTTTGAAGATTTAGTCATTGGTCATTTCCACAATCGTGCACATAATATTTTGGTGGCATGCAAAGCTTATGC AGATGGTGCTATAGTAGGTTCTGTTACAGTTAAAGATGGAGTAGCTGATGTTGATAAAGCTGACATGGGTGCCTCAGGTGAATTCAAAGCAACTGTAAAA AAGATGATAAATGCTCTTGTTACAAACTTCACAAGGTTTGGATCGATCAACTGTGAACAGTTCCGGATTGATGACAGATGA
AA sequence Show only first row Show all	>Potri.013G130800.4 pacid=42811418 polypeptide=Potri.013G130800.4.p locus=Potri.013G130800 ID=Potri.013G130800.4.v4.1 annot-version=v4.1 MDLDMADGNQDVAISKKLKQSEVVLCDVMDAQAEVLICHGKADMGTKGKSKSVHDDAWQQDIKNASSSDLGNYTSVAGSVDSAYHLRGSTSGSTNSNNNN GSNSDMSYHDDEVGNDCDDYADENDCDDHDGYLYYDDEDEDDYSAIQSQFDNVDLPPGVEATLPWLKEPASSSNMISNTSTSTIPNHTIPSHTNHNHSES KIMTTTCLSENKWTASASSSMFPADSSSNGEVEDSGENNTMQKYRNFKQFDNVEDFSDHHYRGTSVSDLPPPKIWAKRIQDEWKSLEKDLPDTIFVRVYE TRMELLRAVIAGPAGTPYHDGLFVFDCIFPPTYPDAPPMVYYYSGGLRLNPNLYECGKVCLSLLGTWSGKETEMWIPGKSTMLQVLVSIQALILNAKPFF NEPGYESSYVGAEGDKRSKKYNEEVFILSLKTMMYTLRRPPKHFEDLVIGHFHNRAHNILVACKAYADGAIVGSVTVKDGVADVDKADMGASGEFKATVK KMINALVTNFTRFGSINCEQFRIDDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	3.46	0.7434
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G337100 [exp]	4.00	0.7312
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	5.29	0.7231
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	6.00	0.7272
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	8.00	0.7439
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	11.40	0.7007
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	11.74	0.7494
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	12.64	0.7282
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	31.49	0.6697
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	35.88	0.6910	Pt-MEKK1.2

Compare expression of checked genes

Potri.013G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.