Plant FIBer expression Database

CCH1.1 (Potri.013G131100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CCH1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03560 946 / 0 FOU2, ATCCH1, ATTPC1 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039829
[exp]
960 / 0 AT4G03560 1050 / 0.0 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Lus10018594
[exp]
482 / 1e-163 AT4G03560 471 / 2e-159 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF00520 Ion_trans Ion transport protein
CL0220 EF_hand PF13499 EF-hand_7 EF-hand domain pair
Representative CDS sequence
>Potri.013G131100.2 pacid=42812012 polypeptide=Potri.013G131100.2.p locus=Potri.013G131100 ID=Potri.013G131100.2.v4.1 annot-version=v4.1
ATGGAGAAGCCTTTGTTAGGAGAAAGCAGCGGTGGACGAGATATACGTTTTAGAAGAAGAGATCAGTCCACGCCCAAGTTTCCTCGACGTTCTGATGCCA
TCACTCATGGTTCTCCCTTTCAAAAAGCTGCTGCTCTTGTTGATCTGGCTGAAGATGGTATTGGTATACCGGAAGAAATTCTTGATCAAGCAAACTTTGA
AAGTGTTGCAAAGTTCTACTTCATCTTTATTCAGTTTGATATCATTTGGACCCTCAATTACTTTGCAATGATAGTACTAAATTTCTTGGAGAAACCGCTG
TGGTGTCAAAATAATTCTGGACATTCTTGCAATGATAGGGAGTACTTCTATCTTGGGGAGCTGCCGTACTTAACTGCTGCAGAGTCCTTTGTTTTTGAGG
GCATAACTCTCATCATACTAGCGGCACATATTTTCTTTCCAATATCATATGAAGGTTTCCGTATCTACTGGAAAAATCCTCTTAATTGTTCTAAGGTCAT
TTGCCTATGCATTTTGGTTGTTGATTTGGTGGCTTATGCGATTTATGCGTCTCCAGTGGCTTTCAATTTTCTTCCTTTCAGAATTGCACCTTACATAAGA
GTTGTCTTGTTTATTCTATACATCAGGGACTTGCAAAGGAGCATCATCATTTTGGGCGGAATGCTTAAGACTTATGTGAATGTCTTGGCTCTAGGGTTTT
TATTTCTGCTTTTCTCCAGTTGGTTAGCCTTTGTCATGTTTGAAGATACCCAACAGGGGAAAATAGTTTTCACTTCATATGGCATCACATTGTATCAGAT
GTTTGTTTTATTTACAACATCCAACAATCCAGATGTATGGATACCTGCATACAAGGTTTCACGTTGGTATAGCCTTTTTTTCATCCTCTACGTGCTAATA
GGAGTGTACTTTGTCACCAACTTGGTTCTTGCTGTCGTATATGACAGCTTCAAAGACCAGCTTGTAAAACAAGTTTCTGAGATGGACCGTTCGAGGAAAA
GAATACTGATCAAAGCCTTCAATCTCATTGATAAGAATGATGCTGGATTCCTTAATAAGGAGCAATGCATTCATTTATTTGAAGCACTTAATAAATACAG
GACTTTGCCAAGCATATCAAGGGAAGAATTCGAGTTGATATTTGATGAACTTGACGATTCTCATGATTTCAAGATCAACTTGGATGAATTTGAGGACCTT
TGCAATGCAATCGCTCTAAGATTTCAAAAGGAGGATGTTCCATCTTACTTTGAATACCTTCCATCAATCTACCATTCACTTTTCTCTGAAAAGTTGAAAG
AGTTTGTACGAAGCCCTAAATTTGGCTACATAATATCATCCATTCTCGTCATGAATCTGTTAGCTGTCATCACTGAGACAACGCTTGATATAGCCAACAA
TTCTGCTCAAAAGGTGTGGCAAGAAGTGGAATTTGTCTTTGGGTGGATCTATGTTGTGGAAATGGCTCTAAAAATCTATGCATATGGATTTGAGAACTAT
TGGAGGGATGGTCAAAATCGCTTTGATTTTGTGATCACTTTGGTTATAGTTATCGGAGAGACTGTAACTTTTGCATCTCCTAATGAGCTGACTTTTCTTT
CAAATGGAGAATGGATTCGTTACCTCCTCATTGCAAGATTGTTAAGATTAATAAGGATCTTGATGTATGTTAGAAGTTACCGGGCTTTTGTTGCCACATT
TTTAACCCTCATACCAAGTCTGATGCCTTATCTGGGCACAATATTTTGCGTCATGTGTATTTATTGCTCTCTTGGTATTCAGATCTTTGGCGGGCTTGTG
AATGCCGGGAACCTCGATTTGGAAGGAACAGGTCTTGCTGAAGATGATTATTTGCTTTTCAATTTTAATGACTATCCAAATGGAATGGTGACACTTTTTA
ATCTGCTCGTTATGGGAAATTGGCACGAGTGGATGCAGAGTTACAAGGATTTGACTGGAACTTACTGGAGCCTTGCATACTTCATCAGCTTCTACCTAGT
AACAGTTCTATTGCTTTTGAATTTGGTTATGGCTTTTGTCCTGGAGGGATTCTTTGCTGAAATGGAACTTGAGACAGCAGAAAAATGTGAAGCAGAGGAC
AAGGAAGGAAGCAACTCAAAATCCCGACGCCGATCTGTTGGCACAAAAACTCGCAGTCAAAGGGTTGATAATCTTCTGCATCATATGTTAAGTGCGGAGC
TGGAAAAACCAGAATGCTCCAATGCATAA
AA sequence
>Potri.013G131100.2 pacid=42812012 polypeptide=Potri.013G131100.2.p locus=Potri.013G131100 ID=Potri.013G131100.2.v4.1 annot-version=v4.1
MEKPLLGESSGGRDIRFRRRDQSTPKFPRRSDAITHGSPFQKAAALVDLAEDGIGIPEEILDQANFESVAKFYFIFIQFDIIWTLNYFAMIVLNFLEKPL
WCQNNSGHSCNDREYFYLGELPYLTAAESFVFEGITLIILAAHIFFPISYEGFRIYWKNPLNCSKVICLCILVVDLVAYAIYASPVAFNFLPFRIAPYIR
VVLFILYIRDLQRSIIILGGMLKTYVNVLALGFLFLLFSSWLAFVMFEDTQQGKIVFTSYGITLYQMFVLFTTSNNPDVWIPAYKVSRWYSLFFILYVLI
GVYFVTNLVLAVVYDSFKDQLVKQVSEMDRSRKRILIKAFNLIDKNDAGFLNKEQCIHLFEALNKYRTLPSISREEFELIFDELDDSHDFKINLDEFEDL
CNAIALRFQKEDVPSYFEYLPSIYHSLFSEKLKEFVRSPKFGYIISSILVMNLLAVITETTLDIANNSAQKVWQEVEFVFGWIYVVEMALKIYAYGFENY
WRDGQNRFDFVITLVIVIGETVTFASPNELTFLSNGEWIRYLLIARLLRLIRILMYVRSYRAFVATFLTLIPSLMPYLGTIFCVMCIYCSLGIQIFGGLV
NAGNLDLEGTGLAEDDYLLFNFNDYPNGMVTLFNLLVMGNWHEWMQSYKDLTGTYWSLAYFISFYLVTVLLLLNLVMAFVLEGFFAEMELETAEKCEAED
KEGSNSKSRRRSVGTKTRSQRVDNLLHHMLSAELEKPECSNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G03560 FOU2, ATCCH1, A... FATTY ACID OXYGENATION UPREGUL... Potri.013G131100
[exp]
0 1 CCH1.1
AT3G19260 LOH2, LAG1 HOMO... LONGEVITY ASSURANCE GENE1 HOMO... Potri.004G141000
[exp]
7.74 0.8216 HOMOLOG.1
AT3G24740 Protein of unknown function (D... Potri.002G216600
[exp]
8.24 0.8212
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Potri.015G105000
[exp]
17.74 0.8074 Pt-PHS1.2
AT3G43300 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFF... Potri.006G216900
[exp]
20.04 0.8097
AT1G29170 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROM... Potri.004G057100
[exp]
22.36 0.8095
AT3G02700 NC domain-containing protein-r... Potri.004G078700
[exp]
22.73 0.7404
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
24.24 0.7836
AT3G48260 WNK3 with no lysine (K) kinase 3 (.... Potri.015G084600
[exp]
24.97 0.7701
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
26.98 0.7928
AT5G11040 AtTRS120 TRS120 (.1) Potri.006G259500
[exp]
27.92 0.7632

Potri.013G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.