Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 284 / 8e-90 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 81 / 9e-16 Protein of unknown function (DUF1421) (.1) AT3G01560 80 / 1e-15 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095400 [exp] 667 / 0 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 76 / 2e-14 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 67 / 1e-11 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 60 / 2e-09 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039827 [exp] 384 / 4e-128 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 382 / 2e-127 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 256 / 6e-79 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10033692 [exp] 254 / 4e-78 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10032138 [exp] 84 / 8e-17 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 83 / 2e-16 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF07223 [poplar] [flax] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Potri.013G131600.4 pacid=42812070 polypeptide=Potri.013G131600.4.p locus=Potri.013G131600 ID=Potri.013G131600.4.v4.1 annot-version=v4.1 ATGGCATCTGGGTCATCGGGTCGGACTAACTCGGGTTCAAAAGGATTCGATTTTGGGTCTGATGACATTCTCTGCTCTTATGAAGATTATGGTACCAACA ATCAAGATTCCTCTAACCTGTCTCATTCAGATACTGTTATAGGGTCCAATTCGAGCAAGCAGGATTTTCACAAAAGTAGAATGACAAGGTCATCAATGTT TCCTGCTACTTCCTATAGCCAGCCAGAGGATTCTTTCAATCAAGATGTGGTCTCTATTGTTGAGAAAAGCATGAAAAAACAAACTGACAACATCATGCGT TTTCTTGAGGGTATCAGTTCACGGCTGTCCCAGTTGGAATTGTGTTGCTACAACCTTGATAAATCAATTGGAGAAATGCGATCAGATTTTGTTCGTGACA ATGAGGAGGCAGATTTAAAACTTAAATCTCTCGAGAAGCACATTCAAGAGGTGCACAGGTCTGTCCAGATTCTAAGGGACAAGCAAGAACTCGCTGAGAC TCAGAAAGAATTATACAAGCTTCAGCTTGCACAGAAGGAACCCTCTTCATCAAGCCATTCCCAATCTAGTGAGGAAAAAGTTGCACCAGCTGCCTCTGAT CCCAAAACAACTGACAATACATCTGAAATACGTAACCAGCAATTGGCTCTTGCTCTGCCTCACCAGGTAGCACCACAGCAACAGGCCCCACCTGTGCCTC CACTCTCTCAAACCCCACCTCAGAATGTGGCACAACAGCAATCTTATTATTTGTCTCCTGCCCCTTTACCAACTCCAGCAGCTCCAACCCAACACCCTCA GAACCAATATCTAACTTCTGATCCTCAGTACCGAACACCCCAAATGCAAGATGTCTCTAGGGTGGCACCAGCACAGCCACAAGTAAACCAGACACCACAA GGCCAACAATTTCCTCAGTACCAGCAACAGTGGCCCCAGCAGTTACATTTGCAACTACAACCACCTCAACAGCCCTCCATGCAGCCCCAGATCAAGCCTC CATCCAACACAGTTTACACTCCCTACCCTCCAGCTGGTCAGCCAACAAATCCCTCTCCACCAGAGACTCTACCTAACAGCATGCCCATGCAAGTTTCATA TTCAGGTGTACCTCAACCCATGTCTAGTTGTGCTGACACGGTGCCATATGGATATGGAGCTGGAAGAGCAGCAGTTCCACAGCAACCTCCACCTCAGCAA ATTAAGGGCAATTTTGGAGCACAACCCAGTGATGTATATGCAACTGCTGGATCTCATCCAGGCCTGCCCCCAGTAAGTGCATACATGATCTATGATGGTG AAACTGGGAGAACACACCATACATCTCAACAACCTCACTTCCCCCAGGGTGTATACCCTCCTCAGCCAGCTGCAGGTGCAGGTATGCTGCCCCGCCATTC AAGCCCTTCACACTTTGTGCGCAACAATTTCTACAACGACTTGATTGAGAAATTGGTAAACATGGGTTTCCGAGGTGATCATGTTGTCAGCGTGATTCAG AGGATGGAGGAGGGTGGTGAGCCTGTGGATTTTAATTCTGTGCTGGATAGGTTGAAAGTGCATTCATCTGGGGGTTCTCAGAGGGGAGGATGGTCTGGTT GA
AA sequence Show only first row Show all	>Potri.013G131600.4 pacid=42812070 polypeptide=Potri.013G131600.4.p locus=Potri.013G131600 ID=Potri.013G131600.4.v4.1 annot-version=v4.1 MASGSSGRTNSGSKGFDFGSDDILCSYEDYGTNNQDSSNLSHSDTVIGSNSSKQDFHKSRMTRSSMFPATSYSQPEDSFNQDVVSIVEKSMKKQTDNIMR FLEGISSRLSQLELCCYNLDKSIGEMRSDFVRDNEEADLKLKSLEKHIQEVHRSVQILRDKQELAETQKELYKLQLAQKEPSSSSHSQSSEEKVAPAASD PKTTDNTSEIRNQQLALALPHQVAPQQQAPPVPPLSQTPPQNVAQQQSYYLSPAPLPTPAAPTQHPQNQYLTSDPQYRTPQMQDVSRVAPAQPQVNQTPQ GQQFPQYQQQWPQQLHLQLQPPQQPSMQPQIKPPSNTVYTPYPPAGQPTNPSPPETLPNSMPMQVSYSGVPQPMSSCADTVPYGYGAGRAAVPQQPPPQQ IKGNFGAQPSDVYATAGSHPGLPPVSAYMIYDGETGRTHHTSQQPHFPQGVYPPQPAAGAGMLPRHSSPSHFVRNNFYNDLIEKLVNMGFRGDHVVSVIQ RMEEGGEPVDFNSVLDRLKVHSSGGSQRGGWSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28300			Protein of unknown function (D...		Potri.013G131600 [exp]	0	1
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	4.58	0.8927
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	6.00	0.8768
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.018G129200 [exp]	9.89	0.8882
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	11.31	0.8570
AT5G35735			Auxin-responsive family protei...		Potri.002G222700 [exp]	11.61	0.8804
AT2G15760			Protein of unknown function (D...		Potri.004G143500 [exp]	12.36	0.8711
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	13.49	0.8635
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	13.60	0.8743
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	14.73	0.8731	Pt-CRCK3.2
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	16.43	0.8737

Compare expression of checked genes

Potri.013G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.