Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28290 48 / 6e-09 unknown protein AT5G42110 44 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G111501 [exp] 69 / 3e-17 AT4G28290 49 / 3e-09 unknown protein Potri.019G100601 [exp] 68 / 4e-17 AT4G28290 49 / 3e-09 unknown protein Potri.001G449633 [exp] 50 / 7e-10 AT4G28290 45 / 7e-08 unknown protein Potri.011G151900 [exp] 43 / 3e-07 AT5G42110 38 / 3e-05 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031644 [exp] 50 / 8e-10 AT4G28290 59 / 2e-13 unknown protein Lus10018592 [exp] 50 / 1e-09 AT4G28290 52 / 1e-10 unknown protein Lus10039825 [exp] 49 / 2e-09 AT4G28290 51 / 2e-10 unknown protein Lus10033693 [exp] 46 / 2e-08 AT4G28290 62 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G131900.1 pacid=42811944 polypeptide=Potri.013G131900.1.p locus=Potri.013G131900 ID=Potri.013G131900.1.v4.1 annot-version=v4.1 ATGCCAATGAAGAAATCAAGTGTTTTTGCTGCTTCGGTTGCTGCAGCTTCTGCTGCTGCCCTCTCTGTTTCTTCCTCTTCTCCTAGTTTTAACTCTAATG TTAAGGAAGCTGGGTCAAACAAAGACCAACAAGGACCTGCTTCCATGGAGAAATTTACACCAAGGTTTGATGGGCTGAGGTTTATTGAAACACTGATCAC TGCTCACAGATGA
AA sequence Show only first row Show all	>Potri.013G131900.1 pacid=42811944 polypeptide=Potri.013G131900.1.p locus=Potri.013G131900 ID=Potri.013G131900.1.v4.1 annot-version=v4.1 MPMKKSSVFAASVAAASAAALSVSSSSPSFNSNVKEAGSNKDQQGPASMEKFTPRFDGLRFIETLITAHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28290			unknown protein		Potri.013G131900 [exp]	0	1
AT5G59350			unknown protein		Potri.009G029300 [exp]	8.00	0.7979
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	14.07	0.8646
AT4G22190			unknown protein		Potri.006G283300 [exp]	17.08	0.8586
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	23.36	0.8505
AT5G51560			Leucine-rich repeat protein ki...		Potri.015G130100 [exp]	32.24	0.8460
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	34.05	0.8220
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.002G072200 [exp]	35.98	0.8249
AT3G19940			Major facilitator superfamily ...		Potri.005G090700 [exp]	49.59	0.7750
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	51.82	0.7962
AT4G17260			Lactate/malate dehydrogenase f...		Potri.008G135920 [exp]	51.93	0.7979

Compare expression of checked genes

Potri.013G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.