Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56170 159 / 2e-50 LLG1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) AT2G20700 158 / 5e-50 LLG2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (.1) AT4G28280 152 / 6e-48 LLG3 LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (.1.2) AT4G26466 137 / 1e-41 LRE lorelei (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095200 [exp] 308 / 3e-109 AT5G56170 153 / 7e-48 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.001G471500 [exp] 163 / 7e-52 AT5G56170 183 / 8e-60 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.011G168500 [exp] 159 / 4e-50 AT5G56170 171 / 9e-55 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033695 [exp] 162 / 9e-52 AT5G56170 135 / 2e-41 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10027120 [exp] 160 / 7e-51 AT5G56170 179 / 3e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000404 [exp] 156 / 5e-49 AT5G56170 180 / 2e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033694 [exp] 134 / 8e-41 AT5G56170 140 / 2e-43 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000405 [exp] 125 / 5e-37 AT5G56170 149 / 1e-46 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031643 [exp] 119 / 1e-34 AT5G56170 98 / 2e-28 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000089 [exp] 115 / 2e-33 AT5G56170 127 / 2e-38 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10039822 [exp] 91 / 6e-24 AT4G26466 79 / 3e-19 lorelei (.1) Lus10010587 [exp] 82 / 9e-20 AT5G56170 99 / 2e-26 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031642 [exp] 80 / 1e-19 AT4G26466 84 / 2e-21 lorelei (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G132000.2 pacid=42810836 polypeptide=Potri.013G132000.2.p locus=Potri.013G132000 ID=Potri.013G132000.2.v4.1 annot-version=v4.1 ATGGCTAGTAATTTTAATCCATGGTTTTATCTCATTTGCTTCTTCTTCCTGGCTGGACTTGCCACCTCTTCCTCGTTCATTTCCTATGATGCACTTGATG TTCATGGAAGTTCCGGCCGAACCCTCCTTCAGATGAAAAAAGCATGCAACATAAGCTTTGAAAATTTGGACTACAGTGTCCTCACAGACAAGTGCAAAGG ACCCCAATACCCAGCCAAGCCATGTTGTGATGCTTTCAAGGAATTTGCTTGCCCTTTTAGTGATGCCATAAATGACCTGGAATCTGACTGCGCTTCGACC ATGTTTAGCTTCATAAACCTCTATGGGAAATACCCTCCTGGCTTGTTTGCCAATGAATGCAGAGAAGATAAGAATGGTCTTGATTGCCAAAATGTGGAAC AATCTAAAAAGAGTGGAGGGGTTCAAATTGCAGCTACTCAATCCTCATTGTTGATGCTCACAGCAGGACTCATAGTGTTGTTACAATTGTTCTAG
AA sequence Show only first row Show all	>Potri.013G132000.2 pacid=42810836 polypeptide=Potri.013G132000.2.p locus=Potri.013G132000 ID=Potri.013G132000.2.v4.1 annot-version=v4.1 MASNFNPWFYLICFFFLAGLATSSSFISYDALDVHGSSGRTLLQMKKACNISFENLDYSVLTDKCKGPQYPAKPCCDAFKEFACPFSDAINDLESDCAST MFSFINLYGKYPPGLFANECREDKNGLDCQNVEQSKKSGGVQIAATQSSLLMLTAGLIVLLQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.013G132000 [exp]	0	1
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	8.48	0.8080
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	24.55	0.8359
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068550 [exp]	31.08	0.8179
					Potri.007G010000 [exp]	31.17	0.8336
AT1G61415			unknown protein		Potri.015G049800 [exp]	31.74	0.8065
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G154700 [exp]	31.74	0.8061
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	32.86	0.8051
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060000 [exp]	34.78	0.8120
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001250 [exp]	38.83	0.7992
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187401 [exp]	44.72	0.8036

Compare expression of checked genes

Potri.013G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.