Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 389 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 232 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 232 / 3e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 230 / 7e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 218 / 5e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 211 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 206 / 6e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 173 / 4e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 168 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 167 / 5e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G132700 [exp] 513 / 5e-180 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 330 / 2e-108 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 325 / 2e-106 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 318 / 2e-104 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 301 / 6e-97 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 266 / 1e-83 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 261 / 2e-81 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 253 / 6e-78 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 249 / 9e-77 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033698 [exp] 408 / 2e-138 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 291 / 4e-93 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005855 [exp] 274 / 2e-86 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 265 / 4e-83 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 265 / 5e-83 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 255 / 2e-80 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009787 [exp] 233 / 3e-70 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 230 / 3e-69 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 220 / 8e-67 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 216 / 2e-64 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G132500.3 pacid=42811524 polypeptide=Potri.013G132500.3.p locus=Potri.013G132500 ID=Potri.013G132500.3.v4.1 annot-version=v4.1 ATGATTATGAATCTTCTCTCGAGATCAAACCCCAGGCCATGGCTGCAGCAGCAGCATCACCAAGGTTATTATTTCCTCTATAAAGTTTTAAGGGCGCTCT CTTTTTCTACAAGTACACAACGGAAAGACTCTTTGAAACTTAGGATTTCAAGGGCTGGAAATCCAAAGGTCTCCATAATTCCAGTTATAGAGCAATGGCT TAAGGAAGGCAATTCCATTAAACAATCTGATCTTCAAAACTTTATCAAGCTATTTCGCAGACATCGCCGCTTTAGCCATGCCCTTCAGATTTCACAATGG ATGAGTGATGAAAGGGGCTCTGAACAATCACCCGGAGACTTTGCGGTTCGGCTGGATTTGATTTCAAAAGTTCATTGCTTAGAACAAGCAGAGGAATATT ATAACAGTATCCCTGACCATTTGAGAGGCACCCAAGTTTATGGTGCTCTTTTAAACTGCTATGCCCACAAAAGGCGCTTGGAAAAAGCAGAGGCCACGAT GCAAAAGATGAGGGAGTTGGGGCTTGTACAAACTCTTTCTTACAATGTAATGCTAAGCCTCTATTCTCATATGGGAAGATATGAGAAACTAGAGGCCCTA GTGAAAGAGATGGAAGAAAAGGGGGTTAATAGTGACATTTACACATTCAACATCAGATTGCATGCATATGTAGCCACCTCCAACATTGAGGAAATGGAGA AACTTCTAATGAAGATGGAAACAGACTCTCTCATCAATATCGACTTCCATACTTTTTTTGCTGTGGCGAATGGTTACTTAAAAGCTGGCCTATTAGAAAA ATCTATAGTAATGTTGAAGAGAGCAGAGGAATTAACTGTTCCAATGGTGGGCACCACAAAAGCACATGCTTATGAAATGCTCCTTACTTTATATGGTTCT GCTGGGAATAAAGATGGAGTATATCGCGTATGGAATTCATATAAGAATACAGGGAGGATTTTCAACTCAACATATATATGTATGATAAACTCATTGATGA GGTTGGGTGATATTGATGGGGCTGAGTGGATTTCGGAGGAGTGGGTATCACGTAAGACACTTTATGACATTCGAATACCAAATACAATGATTCGAGCTTA TTCCAGGAAGGGCCTTTGGAAAAAGGCTGAGGAATATGTAAACAAGATTGTTGAGAGTGGGATGCAGCTCGAAGCAAGCTCATGGGATCATTTGGCAACA GGGTATCACTTTGGTGGTCAGATGGCAAAGGCAGTAGAAACATTAAAGAAAGCGATTTCAATAAGCAAACCAGGATGGAAGCCAAATCCTTATACTTTGA AAACATGTCTTTGGTATTTGGAAAGTAAGGGAGACGAAGAGGCAGCTGAAGAACTTTTGAAGTTTGTCAGTGAACATCATCCTGTCTCGCCAGGTAAGAA TGATATTTAA
AA sequence Show only first row Show all	>Potri.013G132500.3 pacid=42811524 polypeptide=Potri.013G132500.3.p locus=Potri.013G132500 ID=Potri.013G132500.3.v4.1 annot-version=v4.1 MIMNLLSRSNPRPWLQQQHHQGYYFLYKVLRALSFSTSTQRKDSLKLRISRAGNPKVSIIPVIEQWLKEGNSIKQSDLQNFIKLFRRHRRFSHALQISQW MSDERGSEQSPGDFAVRLDLISKVHCLEQAEEYYNSIPDHLRGTQVYGALLNCYAHKRRLEKAEATMQKMRELGLVQTLSYNVMLSLYSHMGRYEKLEAL VKEMEEKGVNSDIYTFNIRLHAYVATSNIEEMEKLLMKMETDSLINIDFHTFFAVANGYLKAGLLEKSIVMLKRAEELTVPMVGTTKAHAYEMLLTLYGS AGNKDGVYRVWNSYKNTGRIFNSTYICMINSLMRLGDIDGAEWISEEWVSRKTLYDIRIPNTMIRAYSRKGLWKKAEEYVNKIVESGMQLEASSWDHLAT GYHFGGQMAKAVETLKKAISISKPGWKPNPYTLKTCLWYLESKGDEEAAEELLKFVSEHHPVSPGKNDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	0	1
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	4.79	0.8810
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	8.36	0.8315
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	8.48	0.8724
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	9.38	0.8656
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	11.31	0.8494
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	11.48	0.8702
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G032600 [exp]	16.88	0.8305
AT3G52170			DNA binding (.1.2)		Potri.008G029500 [exp]	17.66	0.7968
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	18.33	0.8271
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	19.87	0.8558

Compare expression of checked genes

Potri.013G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.