Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 244 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 232 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 220 / 4e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 205 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 203 / 3e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G28020 203 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 196 / 3e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 194 / 7e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 149 / 3e-39 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063300 [exp] 340 / 2e-112 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 328 / 9e-108 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 326 / 1e-106 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 322 / 1e-105 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 307 / 1e-99 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 274 / 7e-87 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 266 / 1e-83 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 251 / 1e-77 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 249 / 3e-77 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018588 [exp] 391 / 3e-132 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 296 / 3e-95 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 277 / 1e-87 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 269 / 4e-86 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005855 [exp] 254 / 4e-79 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 244 / 4e-75 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 230 / 7e-70 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 213 / 4e-64 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 214 / 3e-63 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 213 / 4e-63 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.013G133000.3 pacid=42812771 polypeptide=Potri.013G133000.3.p locus=Potri.013G133000 ID=Potri.013G133000.3.v4.1 annot-version=v4.1 ATGAATCTTCATTTCTCTAGAAAATTATTTTCTTTACTTCCTCAAAACTATCAATTCTCCATCTCCTCCACAAGGGTTTTAGCTTCTTTATTCTTCTCTA CTAAAACCCCAACCAAACCATTATCTTCTTCACACTCTACTACATTATGCAGAAGAATTGAAGCCATAAGAGACCCCAGGGTCTCCATCGTACCGGTGCT TGATCAATGGGTCAAAGAAGGCAACACTGTTGACAAACACCATCTTGTGTCCTTGGTTCGTCTCATGAAAGATTATAAACGGTTCAAACATGCTTTAGAG GTATCAGAATGGATGACAGCCCGGCGGTTCTTTACATTTACAACGGAAGATGCAGCAGTCAGATTGGGATTAATTCATAGAGTTCGTGGATTAGAGGAGG CCGAGAACTACTTTAATAAACTTTCGGTTAAGTTAAAAACTAAGTACACATATGGTGCTATTCTTAATGGCTGTGTGCGAGAGAAATCTGTGCAGAAAGC AGAAGCAGTTATGCAGGAAATGAGAGAAGGGGGCATGACAACATCATCTTTTCCGTACAACATCTTGATCATCCTTTACTCTCAAACCGGAGACTTTGAC AAAATCCCCCCATTGATGAAGGAAATGGAAAGGAATGGAATTGCTGAAGATAAATATACACTGAGAAATCTAATTGCTGCTTCAGTTGCTGCATCTGACA TTTCCGGAGTGGAAAGAATCTTGAAATTGATGGAGGAGAATCCGGAGCTTGGTCTAGATTGGAAATTGTATGCAATGGCTGCTGATGCGTATCTGAAGAT TGGGTCCATTGAAACAGCTTTGACAATGTTGGAGAAGCTGGAGAAATGGATGGCCTTCAGAAAGAAGAAAGCAGTATTTAATTTTCTTTTGAGTCTCTAT GCAAAAACAGGGAATAAGGATGAGCTTTATCGAATTTGGAATTTGTACAAGCCCTCGAGTGAATCCATGGATACATCATATTGTTGCATGATTGACTCTC TTACGAAGCTGGATGATATTGAGGGAGCAGAAAAGATCTTTGAAGAGTGGGAGTCCCAGTGCACCACCACGTATGACTTCCGTGTATTGAATGGGCTTCT TGTTGCTTATTGCAATAGGGGACTTTTTGAGAAGGCTGAAGCAGCCATAGAAAAGGCAGTGCAAGGAAGAACACCTTATGCGAGCACATGGCATGTAATG GCAAAGGGGTATATGGAACATGATCAAATCCCCAAGACTGTTGAGATGTTGAAGAGAGCCGTCAATGTTGGAAGAGACTGGAAACCAGATCCCATCCTTG TGAATACCTGTTTGGAGTACTTGGAAGGTCAGGGAGATGCTGAAGAGATGAAAGAATTCACCCGGTTGGTGAAAAACTAG
AA sequence Show only first row Show all	>Potri.013G133000.3 pacid=42812771 polypeptide=Potri.013G133000.3.p locus=Potri.013G133000 ID=Potri.013G133000.3.v4.1 annot-version=v4.1 MNLHFSRKLFSLLPQNYQFSISSTRVLASLFFSTKTPTKPLSSSHSTTLCRRIEAIRDPRVSIVPVLDQWVKEGNTVDKHHLVSLVRLMKDYKRFKHALE VSEWMTARRFFTFTTEDAAVRLGLIHRVRGLEEAENYFNKLSVKLKTKYTYGAILNGCVREKSVQKAEAVMQEMREGGMTTSSFPYNILIILYSQTGDFD KIPPLMKEMERNGIAEDKYTLRNLIAASVAASDISGVERILKLMEENPELGLDWKLYAMAADAYLKIGSIETALTMLEKLEKWMAFRKKKAVFNFLLSLY AKTGNKDELYRIWNLYKPSSESMDTSYCCMIDSLTKLDDIEGAEKIFEEWESQCTTTYDFRVLNGLLVAYCNRGLFEKAEAAIEKAVQGRTPYASTWHVM AKGYMEHDQIPKTVEMLKRAVNVGRDWKPDPILVNTCLEYLEGQGDAEEMKEFTRLVKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	1.41	0.9234
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.008G179201 [exp]	1.73	0.8899
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	3.74	0.8435
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	4.24	0.8904
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	5.29	0.8856
AT5G63480			unknown protein		Potri.012G099200 [exp]	5.74	0.8553
AT2G44850			unknown protein		Potri.002G137300 [exp]	5.91	0.8820
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.015G090500 [exp]	7.14	0.8307	HAG905
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	9.79	0.8671
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G023700 [exp]	10.00	0.8182

Compare expression of checked genes

Potri.013G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.