Plant FIBer expression Database

Potri.013G133200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28260 508 / 4e-177 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039820
[exp]
575 / 0 AT4G28260 489 / 1e-169 unknown protein
Lus10018587
[exp]
563 / 0 AT4G28260 486 / 9e-168 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G133200.2 pacid=42811879 polypeptide=Potri.013G133202.1.p locus=Potri.013G133200 ID=Potri.013G133200.2.v4.1 annot-version=v4.1
ATGGCTGGAAATCGTGAAGTTGGGTTCCCGAAGACAACTGCTAGTAGTTTAAGGGAACAGTTAGCAAGAACTACGCTTAGTAGGGTGAGAGCACGAGGAC
ACCCTTATTTGGAGCTTCGCGAGGATGGCAAGCGGTTCATATTCTTTTGTACTTTGTGTCTTTCCCCGTGCTATAGTGATACCATTTTGCTTGATCACTT
GAGGGGTAATCTTCATACTGAGAGGTTATCTGCTGCGAAAGCTACTCTTTTGAAACCGAACCCATGGCCCTTTAGTGATGGGATTCATTTCTTTGATGCT
TCGAGTGGGAATGAGGAACAGTTGGCAATCAAGGATGGTAAAGAGAGTAGTAGGTTCTTGAAGTTCGAAGAGAACAGTGATAATCTTGCAATTGTTAAAT
ATGTTGAAAATCTTAAACCTGGTTGTGATACGGTTGTTGATGAGAATTTAAGTGGTAGTGATGAGGGTTCTGATCTGGTGATTCCGAGTGTGCGCCTTAA
AGAAGAAGTTTCTGATTTGAAAGCAACGCTTGTGGGTTCTGGACAGATTGCTGCCAGGATGTATGAGAAGAAGGATGGTTCAAATGAGATTAGTAGAATA
TGGTGTGAATGGCTGGGGAAAAAGAGTTCTAATGATGAGGATAAGGTCAAGGTTTTGGATCATGACTTTGGTGTTGTAACTTTTGCTTATGATTACGAAT
TGGGAAAGAGTGGATTGTTTGATGATGTGAAGCTATTGCTCTCTTCTAGTGCTCCAGCACTGACAGAAAATGATGAGAGGGGTAATTGGAAAAGGAAGAG
ATCTGTTTCTGAGCCAGAGGATGTTAGTAGATCTTTGACTAATCAGTATGGTTTATGCGAGGAAGAATCTTCAAAGACAACTTGTGCCTCTTCTAATTTG
GTGCTGGATCGATATGATGATCAGCTCATGCACACCAGATTTATATCAAACAAGACAGTAAGGCGAGAGGTAAGAAAGCAACAGCGCATAGCAGCAGAAA
AAATGTGTGATATCTGTCAGCAAAAGATGCTTCCTGAGAAAGATGTAGCAACGCTTTGGAACAGGAAGACTGGAAAACTTGCTTGCAGTAGCAGAAATGT
GTATGGGGCATTTCATGTATTTCACGCTTCTTGCCTTATACACTGGATACTCTACTGTGAGTTTGAAATTGTTCGAAATCAGACAGTCAGTACCAAAGGG
GGGCGAAGATCTAGGAAAAAGAATGGAACCAAATCAAATACAACAGGAAAGGATGGAACGGTGAATGTTTTGCCAAACCCAATTGTTTCTGTGTTCTGTC
CAGACTGCCAAGGCACCGGTGTGAACATTGAGGGAGATGAGTTTGAGAAGCCACTTACCCCTCTTTCAGAAATGTTCAAGTACAAGATCAAAGTGAGTGA
GGGACATAGAGGATGGATGAAAAATCCAGAGATCTTGGAGAATTGCTCAACAGGTTTTCATTTCCCTTCACAATCTGGAGAACCAGTTCAGGAAAAGGTG
TTGCCGCTGAAGTTGCTGCATTTCTATAGACCTGAAGAGTAG
AA sequence
>Potri.013G133200.2 pacid=42811879 polypeptide=Potri.013G133202.1.p locus=Potri.013G133200 ID=Potri.013G133200.2.v4.1 annot-version=v4.1
MAGNREVGFPKTTASSLREQLARTTLSRVRARGHPYLELREDGKRFIFFCTLCLSPCYSDTILLDHLRGNLHTERLSAAKATLLKPNPWPFSDGIHFFDA
SSGNEEQLAIKDGKESSRFLKFEENSDNLAIVKYVENLKPGCDTVVDENLSGSDEGSDLVIPSVRLKEEVSDLKATLVGSGQIAARMYEKKDGSNEISRI
WCEWLGKKSSNDEDKVKVLDHDFGVVTFAYDYELGKSGLFDDVKLLLSSSAPALTENDERGNWKRKRSVSEPEDVSRSLTNQYGLCEEESSKTTCASSNL
VLDRYDDQLMHTRFISNKTVRREVRKQQRIAAEKMCDICQQKMLPEKDVATLWNRKTGKLACSSRNVYGAFHVFHASCLIHWILYCEFEIVRNQTVSTKG
GRRSRKKNGTKSNTTGKDGTVNVLPNPIVSVFCPDCQGTGVNIEGDEFEKPLTPLSEMFKYKIKVSEGHRGWMKNPEILENCSTGFHFPSQSGEPVQEKV
LPLKLLHFYRPEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28260 unknown protein Potri.013G133200
[exp]
0 1
AT1G10390 Nucleoporin autopeptidase (.1.... Potri.001G453200
[exp]
4.24 0.8431
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Potri.002G152100
[exp]
6.70 0.8310 PLDBETA1.1
AT5G23490 unknown protein Potri.004G133700
[exp]
8.71 0.7851
AT2G44950 RDO4, HUB1 REDUCED DORMANCY 4, histone mo... Potri.014G055800
[exp]
9.00 0.8384
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Potri.002G170600
[exp]
14.56 0.8319
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Potri.017G092600
[exp]
17.83 0.8260
AT5G17510 unknown protein Potri.013G076800
[exp]
24.97 0.7951
AT2G04880 WRKY ATWRKY1, ZAP1 zinc-dependent activator prote... Potri.002G221600
[exp]
31.11 0.8138
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.009G129600
[exp]
32.87 0.7831
AT3G26850 histone-lysine N-methyltransfe... Potri.006G227200
[exp]
35.29 0.8234

Potri.013G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.