Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03670 164 / 7e-43 ankyrin repeat family protein (.1) AT4G03470 149 / 1e-37 Ankyrin repeat family protein (.1) AT4G03460 145 / 3e-36 Ankyrin repeat family protein (.1) AT4G03500 144 / 4e-36 Ankyrin repeat family protein (.1) AT4G03450 142 / 2e-35 Ankyrin repeat family protein (.1) AT4G14400 139 / 1e-34 ACD6 ACCELERATED CELL DEATH 6, ankyrin repeat family protein (.1.2.3) AT4G05040 138 / 2e-34 ankyrin repeat family protein (.1.2.3.4.5) AT4G03480 137 / 7e-34 Ankyrin repeat family protein (.1) AT4G14390 137 / 8e-34 Ankyrin repeat family protein (.1) AT4G03440 130 / 3e-31 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G133800 [exp] 622 / 0 AT1G03670 177 / 3e-47 ankyrin repeat family protein (.1) Potri.013G133400 [exp] 609 / 0 AT1G03670 184 / 6e-50 ankyrin repeat family protein (.1) Potri.013G133700 [exp] 597 / 0 AT1G03670 197 / 1e-54 ankyrin repeat family protein (.1) Potri.013G134466 [exp] 573 / 0 AT1G03670 189 / 3e-51 ankyrin repeat family protein (.1) Potri.019G101700 [exp] 570 / 0 AT1G03670 182 / 2e-49 ankyrin repeat family protein (.1) Potri.013G134500 [exp] 555 / 0 AT1G03670 167 / 2e-45 ankyrin repeat family protein (.1) Potri.019G101500 [exp] 308 / 4e-95 AT1G03670 212 / 9e-60 ankyrin repeat family protein (.1) Potri.018G078450 [exp] 223 / 6e-64 AT1G03670 154 / 1e-39 ankyrin repeat family protein (.1) Potri.018G077250 [exp] 223 / 8e-64 AT1G03670 165 / 2e-43 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 137 / 1e-33 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10038609 [exp] 94 / 6e-21 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10037894 [exp] 92 / 4e-19 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10026833 [exp] 83 / 2e-16 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10015224 [exp] 81 / 1e-15 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 80 / 2e-15 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 80 / 2e-15 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 78 / 9e-15 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 71 / 1e-12 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10013878 [exp] 70 / 1e-12 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.013G133900.5 pacid=42812577 polypeptide=Potri.013G133900.5.p locus=Potri.013G133900 ID=Potri.013G133900.5.v4.1 annot-version=v4.1 ATGTATAGCGTAGAAATAAACATAGTTGAAAACACGATTCCGAGAGATCACATGGCAAATACAAAGATAGATAGTAAGTTATATGAGTGTGTGAAGCAGG ACAATATTGAGGAATTTAAAAGCCGCGTCCAGCAACATTTAGCAGAGAAGCTAGTGACTCCCTGTGGGAACTCATTACTTCATGTAGCCATAAGGTATAA AAGTAATAATATTACTGCTTACCTGGCTAAAGAGATCCCTTCTCTAATCACCAGCCGAAACGACCAGCATGACACAATCCTTCATGTTGCTGCCAGAGAG GGAAGTGTTAGTCATACAATTCGAAACCTTGTCAATTCGAATGCTTTCTTGCTGAGGATGACAAATAGAGAAGGAAACACTCCTTTGCATGTTGCAGTGA TAAATGGTAACAAAGAAGTTGCCAAATTCCTCATTTCCAGAGATCGAGAAGTGGCCTATTACAAAAACAAGACTGGCAGGTCTCCTTTATATCTGGCTGT TGAAAATCGCAATATGAACGGGATTCTTGATGATCTCTTGAATGAGGAAGCTTTGATCCCTACAGAAAGAGAAGATGGAGATTCACTTGGCATGCTACCA CAAGGAAAGTCCCCTGTTCATGCTGCCGTCGAGAACCGTATCATAGGTATATTGCAGAAAATCGAAGAAGCAAAGCCAGAGTTATTACGTCTCCATGACA AAGAGTTTGGAAATCCACTCCATTATGCATCATCTACAGGCTATGTGGAAGGAGTTCAATTCCTATTACAAAAGTATCGTGCCGGTGCTGATGAAACTGA CCAAGAGGGCAACTATCCTATTCATCTTGCATGCAAGGGAGGCTCGGTTGCTTTGTTAGAGGAATTCCTGAAAGTTATCCCCTATCCAAACGAATTCATA AATGAAAAAGGGCAGAACATTCTTCATGTAGCGGCCCAAAATGAACATGGCTTTTTGATTATGTACATACTCGAACAGGATAAGAAGATCGTAGAAACAC TGCTAAATGCGATGGATGAGGATGGAAATACACCTTTGCATTTGGCAACACAGCACGGCCGACCCACATCTGTATTTCTTCTTGTGCGTGCCATCCGCTT TCATCGTCATATTGTTAACAATGACGGTTTGACACCATATGAACTTGGTAGAAAACAATCCAAAATAGCGGTACAGCAATATGAAGGAAGAGATGAAACG TTTGCTAAGGAGCGACAGCACTCTGATTCAAATAACAGGGTGGAAGGGACCGAGGACAAACCAGCTGATCAAAACAAGCAAGACAAGAAAAAGGCATCAC TAAAAGATTACGAACTGCTAGATTTTTATGGAGCGATGATGACATTATCGATCCTATACTTCCATGCTTTCCCTTGGAAAAAATCCTTCCTTGACCATTT CCCTGGTACTCGACCCATGCAACCAAGGAAAATGGAAACAAAAACAAGGATAGGGAATCTTCTTGTGGTAGCAGTGCTTGTGGCTGGTGCGACCTTCGCT GGTGCTATTCAATTGCCACAATTAAGGGGTAATATTAACTCAAGTGAACATCATCATGAATTTCACAGCAGTACTATTACTGCCTCCCATACTGGTTATG AGAGGCTTCTGAATGATTATTTATCTTGGGATGTTTGGGCTTTATCTCTCTCTCTGGTGGCATCTCTAATCCTTCTTAGGGCAAACTTTACTGATGCCAA TTTTGAAATCATTGCGGTTGGACTTTCAGTCAGCATGGTTGGTTTGGCTATTCTCTTCATGTTCGCGGCATTCATTGATGCTGTGACTATACCATCACTA GGATCCCATGATAAGTGGTTAAAAACCACCATTACAGTGGTGACCTTTGCGGGTTTATATGCTCTGGAATTGATTGTGAGTCTTCCGTTCGGAGGCTTCC CAAATCTTCGAGGAATGCTCTTGCGTTATTTCTACTACATATATTTTTTTTTTCGTTTCTACACTTACGAGTGGCTGGCTTATAAAATTTACAAGAGAAA GCACAAATAA
AA sequence Show only first row Show all	>Potri.013G133900.5 pacid=42812577 polypeptide=Potri.013G133900.5.p locus=Potri.013G133900 ID=Potri.013G133900.5.v4.1 annot-version=v4.1 MYSVEINIVENTIPRDHMANTKIDSKLYECVKQDNIEEFKSRVQQHLAEKLVTPCGNSLLHVAIRYKSNNITAYLAKEIPSLITSRNDQHDTILHVAARE GSVSHTIRNLVNSNAFLLRMTNREGNTPLHVAVINGNKEVAKFLISRDREVAYYKNKTGRSPLYLAVENRNMNGILDDLLNEEALIPTEREDGDSLGMLP QGKSPVHAAVENRIIGILQKIEEAKPELLRLHDKEFGNPLHYASSTGYVEGVQFLLQKYRAGADETDQEGNYPIHLACKGGSVALLEEFLKVIPYPNEFI NEKGQNILHVAAQNEHGFLIMYILEQDKKIVETLLNAMDEDGNTPLHLATQHGRPTSVFLLVRAIRFHRHIVNNDGLTPYELGRKQSKIAVQQYEGRDET FAKERQHSDSNNRVEGTEDKPADQNKQDKKKASLKDYELLDFYGAMMTLSILYFHAFPWKKSFLDHFPGTRPMQPRKMETKTRIGNLLVVAVLVAGATFA GAIQLPQLRGNINSSEHHHEFHSSTITASHTGYERLLNDYLSWDVWALSLSLVASLILLRANFTDANFEIIAVGLSVSMVGLAILFMFAAFIDAVTIPSL GSHDKWLKTTITVVTFAGLYALELIVSLPFGGFPNLRGMLLRYFYYIYFFFRFYTYEWLAYKIYKRKHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03670			ankyrin repeat family protein ...		Potri.013G133900 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.005G138800 [exp]	1.00	0.9729
AT5G45540			Protein of unknown function (D...		Potri.012G018400 [exp]	3.00	0.9646
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	4.69	0.9669
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G087500 [exp]	5.00	0.9205
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107000 [exp]	6.24	0.9326
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	8.00	0.9559
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	9.48	0.9488
AT1G54860			Glycoprotein membrane precurso...		Potri.013G023701 [exp]	10.53	0.9082
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002700 [exp]	11.22	0.8376
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	12.64	0.9310

Compare expression of checked genes

Potri.013G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.