Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrEXPB3,Pt-EXPB1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28250 402 / 3e-143 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 383 / 1e-135 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 242 / 4e-80 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 208 / 6e-67 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT3G60570 196 / 5e-62 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT1G65681 184 / 7e-58 EXPB6 beta expansin 6 (.1) AT1G12560 133 / 1e-37 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G62980 124 / 2e-34 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT2G40610 123 / 6e-34 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT4G17030 122 / 2e-33 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G101900 [exp] 466 / 1e-168 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 239 / 6e-79 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G112900 [exp] 131 / 8e-37 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.001G001100 [exp] 126 / 3e-35 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.017G085300 [exp] 125 / 4e-35 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G060800 [exp] 122 / 8e-34 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.002G184700 [exp] 122 / 1e-33 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.004G123200 [exp] 122 / 1e-33 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G151500 [exp] 121 / 4e-33 AT4G17030 297 / 6e-102 expansin-like B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039816 [exp] 429 / 5e-154 AT4G28250 402 / 3e-143 expansin B3 (.1.2) Lus10018583 [exp] 427 / 7e-153 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10036066 [exp] 235 / 1e-77 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10038933 [exp] 214 / 8e-69 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10033700 [exp] 192 / 1e-59 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10031638 [exp] 192 / 7e-59 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10040149 [exp] 142 / 2e-41 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001010 [exp] 140 / 2e-40 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10000957 [exp] 138 / 9e-40 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011012 [exp] 136 / 5e-39 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.013G134300.1 pacid=42811779 polypeptide=Potri.013G134300.1.p locus=Potri.013G134300 ID=Potri.013G134300.1.v4.1 annot-version=v4.1 ATGCAGCTCTTGGGGTTACATGTTGTGGTGCTCTTGAAGTGTTTTTTAGTAGTTTTTGGACAGCAATATCATACTCACCATGATGTGGCTGACTTACACT GGAAACCGGCCACTGCCACCTGGTACGGCAGTCCTGACGGTGATGGTAGTAACGGAGGGGCGTGTGGGTACGGGTCATTAGTGGATGTGAAGCCATTGAG AGCCAGAGTTGGTGCAGTGAGCCCCATACTCTTCAAGAATGGAGAAGGATGTGGGGCATGTTACAAAGTTAGGTGCCTAGACAAGAGCATATGCTCAGAA AGGGCAGTGACCATAATTGTTACAGATGAGTGTCCAGGTGGGTATTGTTCAAATGGTAACACCCACTTTGACCTCAGTGGTGCAGCCTTTGGTCATATGG CTATTTCTGGTGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATATATCGCAGGACCCCATGCAAGTACCCTGGGAAGAACATTGCCTTCCA TGTCAATGAAGGTTCAACAGATTATTGGCTATCCCTTCTAGTGGAATTTGAAGATGGCGATGGTGATGTTGGATCCATGCATATCAGAGAAGCGGGTGGC ACTGAGTGGCTAGAGATGAATCACCTGTGGGGTGCAAATTGGTGTGTTATTAGGGGACCCTTGAAAGGACCATTATCAGTGAAGTTAACAACACTATCAA CAGGAAGAACACTGTCTGCAAGAGATGTGATTCCAAGAAATTGGGTCCCAAAAGCTACTTACACCTCTAGGCTCAATTTCTTCCATTAA
AA sequence Show only first row Show all	>Potri.013G134300.1 pacid=42811779 polypeptide=Potri.013G134300.1.p locus=Potri.013G134300 ID=Potri.013G134300.1.v4.1 annot-version=v4.1 MQLLGLHVVVLLKCFLVVFGQQYHTHHDVADLHWKPATATWYGSPDGDGSNGGACGYGSLVDVKPLRARVGAVSPILFKNGEGCGACYKVRCLDKSICSE RAVTIIVTDECPGGYCSNGNTHFDLSGAAFGHMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGG TEWLEMNHLWGANWCVIRGPLKGPLSVKLTTLSTGRTLSARDVIPRNWVPKATYTSRLNFFH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Potri.013G134300 [exp]	0	1	PtrEXPB3,Pt-EXPB1.3
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.016G082700 [exp]	5.91	0.8181
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.015G075800 [exp]	6.63	0.8250
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G120500 [exp]	7.87	0.8836
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	15.49	0.8114	EXPA3.1,PtEXPA16
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.003G056900 [exp]	21.26	0.8532	AUX22.3
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	33.40	0.8189	XYL1.2
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.002G199200 [exp]	34.78	0.8208
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	38.67	0.7667
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	43.88	0.7977
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	51.38	0.7563

Compare expression of checked genes

Potri.013G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.