Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02990 83 / 2e-18 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14220 77 / 4e-16 Ribonuclease T2 family protein (.1) AT1G26820 76 / 9e-16 RNS3 ribonuclease 3 (.1) AT1G14210 57 / 5e-09 Ribonuclease T2 family protein (.1) AT2G39780 53 / 6e-08 RNS2 ribonuclease 2 (.1.2) AT2G20760 47 / 9e-06 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086700 [exp] 87 / 1e-19 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.010G168700 [exp] 80 / 4e-17 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086800 [exp] 73 / 7e-15 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.019G102000 [exp] 66 / 1e-11 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.012G099866 [exp] 56 / 4e-10 ND / Potri.014G174400 [exp] 59 / 9e-10 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.010G168600 [exp] 45 / 1e-05 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012823 [exp] 86 / 4e-19 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 84 / 2e-18 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10035882 [exp] 79 / 7e-17 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10035881 [exp] 79 / 1e-16 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10027978 [exp] 78 / 1e-16 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10003110 [exp] 75 / 2e-15 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10015409 [exp] 65 / 6e-12 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1) Lus10023371 [exp] 65 / 8e-12 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1) Lus10022385 [exp] 49 / 2e-06 AT1G26820 92 / 2e-21 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [poplar] [flax] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Potri.013G134400.3 pacid=42811306 polypeptide=Potri.013G134400.3.p locus=Potri.013G134400 ID=Potri.013G134400.3.v4.1 annot-version=v4.1 ATGAGGCAACTTTTCGTGAAACTGAAACAGAACCCTCCACCTGACATGATGCCTCCCCCTCCCACATCTGCCAAAGATGGAAAGGATGCGAAGGATGAAA ATAATGGGAAAGATGCCGAGGATGTGAAAGGTGAGAAAGATGGAAAGAGTGAAAATGAAGGGAAAGATGCCAAGAATGGAAAACCTCCTACACAAATTGC TGCTGCTGCTGCAGCTGCCGACGAAAACAAGCCTGCTTCACCTTCTAAAGACATTGCCATGAGCAGTTCACTTGACTCGTCAAAATTAGATGCTCTTGTT GCTGCTGTTGCTGAAGAAGCAAAATCTATACCAGCTCATCCTCCTCCAGCTCCTTCTCCCCATCATTTTCCGCTTGACTTATGGCCTAAGGACTCCCTCT TACCTCGACGTCCTTGTCCTCCTCTACCTCCCGATCATTTTTGGCTTGTCCACACATGGCCTAAGGGCTTTTGCTCAAATTCCTCAGTACATTGTCCACA ACCTAATAACCTCCCACTCGAGCTAACAATTCATGGCTGGTGGCCTGTGGACAGAAAAGATAGTACTTTGAATAACTATCGGCAAGTAGGGCCAATTAAT TATCTGTTCACTGGAGAAGCTGGTGAAGAGCTTTACACTGAAATGAAAAATAATTGGCCCAACCTGACATCCCCCATCGAGTACCGTTACGGGCACATAG CTTTCTGGGAAAAGGAGTGGGCTCGTCATGGCATTTGTTCCTGCTTCGAACCCCGACTGTACTTTGAAACAGCTTTGGCATTGAAGAGAACCATTAACGT ATCTCAAGCTTTGAGAGCTAATGGGATAAAACCTGGGATTGAATACCCAAGACGGCGTTTCGTGAAAGCCTTGAGAAGAAAAATACCCCGTTTATCCTTT GCTATGAGATGCGGCGACAAGAATGGAACCAAAATTCTCATCGAAATCAGGGTTTGCACCAGCGAAACCCATGCAATTTCATGTTCTCAACGGTTGAATG ACAACTGTGGGTCTTGTTACATAAAACTTGTATCCGAAATTGAACCATTTTAA
AA sequence Show only first row Show all	>Potri.013G134400.3 pacid=42811306 polypeptide=Potri.013G134400.3.p locus=Potri.013G134400 ID=Potri.013G134400.3.v4.1 annot-version=v4.1 MRQLFVKLKQNPPPDMMPPPPTSAKDGKDAKDENNGKDAEDVKGEKDGKSENEGKDAKNGKPPTQIAAAAAAADENKPASPSKDIAMSSSLDSSKLDALV AAVAEEAKSIPAHPPPAPSPHHFPLDLWPKDSLLPRRPCPPLPPDHFWLVHTWPKGFCSNSSVHCPQPNNLPLELTIHGWWPVDRKDSTLNNYRQVGPIN YLFTGEAGEELYTEMKNNWPNLTSPIEYRYGHIAFWEKEWARHGICSCFEPRLYFETALALKRTINVSQALRANGIKPGIEYPRRRFVKALRRKIPRLSF AMRCGDKNGTKILIEIRVCTSETHAISCSQRLNDNCGSCYIKLVSEIEPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.013G134400 [exp]	0	1
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	6.63	0.9288
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	6.70	0.9291
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G135000 [exp]	7.74	0.9055
					Potri.014G030600 [exp]	9.16	0.9110
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	9.69	0.9294
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	14.31	0.9265
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	14.83	0.9131
AT5G60160			Zn-dependent exopeptidases sup...		Potri.012G095200 [exp]	15.19	0.8592
					Potri.010G132101 [exp]	15.42	0.9102
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.005G112200 [exp]	17.74	0.9182

Compare expression of checked genes

Potri.013G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.