Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38050 304 / 2e-104 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 78 / 1e-16 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 68 / 5e-13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 60 / 3e-10 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT3G55360 52 / 1e-07 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047800 [exp] 390 / 2e-138 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 372 / 1e-131 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 81 / 6e-18 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 77 / 3e-16 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 76 / 4e-16 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 76 / 7e-16 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 74 / 2e-15 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 72 / 1e-14 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.009G125200 [exp] 72 / 3e-14 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021127 [exp] 246 / 9e-83 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 149 / 1e-44 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 70 / 1e-13 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 64 / 2e-12 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 64 / 1e-11 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 62 / 8e-11 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10005162 [exp] 61 / 2e-10 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10001695 [exp] 58 / 2e-09 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10041820 [exp] 0 / 1 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF06966 [poplar] [flax] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Potri.013G134433.1 pacid=42811861 polypeptide=Potri.013G134433.1.p locus=Potri.013G134433 ID=Potri.013G134433.1.v4.1 annot-version=v4.1 ATGGCCTTGTTAGACCAGAGTTTCTTTCATTACAGCCTCCTAGCTTACTACCTCCTAGGACTCCCTACCTTCATTGCCCTAAGGTTCTTTCAATTCCCAT ATGGCAAGCACAACCGTCTAGGATGGGGCCCTACAATTCCTCCACCTTTGGCTTGGTTTATCATGGAAAGCCCCTCCATTTTGCTCCCCCTCATCCTCTT TCCCTTGGGCCAACACTTCACAAATCCCAAAGCTCTAGTTCTCATGTCTCCTTATCTCCTCCACTACTTCCACCGCACTTTCATCTACCCGCTTCGCATT TACCAGAGTACCTCTCAACAGAATACCAAAACCACTATTGGTTTCCCGTTGATTTTGGCCTTTAACGGATTTTTGACTCAAGCATTGAATACTTACATAC AGGCTAGGTGGGTTTCTCATTATAAAAGTGATTATGATAGTGATGGAGGTTTGTTTTGGTGGAAATTCTTTGGTGGATTGGTGGTTTTTCTATGGGGCAT GAGGATTAATATGTGGGCTGATACGGCTTTGCTGGTTTTGAAGAGGGAAAGTGGTGGATATAAGGTGCCAAGAGGAGGGTGGTTTGAGCTGGTAACTTGT CCTAACTACTTTGGAGAGATTGTGGAGTGGCTTGGATGGGCAGTGATGACTTGGTCATGGGCTGGGTTTGGTTTTTTCCTCTACACATGTTCTAACTTGG TGCCTAGGGCATGTGCCAATCACAAATGGTATTTGCAGAAGTTTGGAGAGGATTATCCCAAGAATAGAAAAGCAGTGATCCCTTTCCTCGTTTAA
AA sequence Show only first row Show all	>Potri.013G134433.1 pacid=42811861 polypeptide=Potri.013G134433.1.p locus=Potri.013G134433 ID=Potri.013G134433.1.v4.1 annot-version=v4.1 MALLDQSFFHYSLLAYYLLGLPTFIALRFFQFPYGKHNRLGWGPTIPPPLAWFIMESPSILLPLILFPLGQHFTNPKALVLMSPYLLHYFHRTFIYPLRI YQSTSQQNTKTTIGFPLILAFNGFLTQALNTYIQARWVSHYKSDYDSDGGLFWWKFFGGLVVFLWGMRINMWADTALLVLKRESGGYKVPRGGWFELVTC PNYFGEIVEWLGWAVMTWSWAGFGFFLYTCSNLVPRACANHKWYLQKFGEDYPKNRKAVIPFLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.013G134433 [exp]	0	1
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	5.09	0.9201
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	12.00	0.8975
					Potri.014G069900 [exp]	15.87	0.8755
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026500 [exp]	16.70	0.8864
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.011G156600 [exp]	16.73	0.8723
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	17.77	0.8843
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	23.23	0.8794
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G450700 [exp]	23.45	0.8614
					Potri.005G189000 [exp]	24.71	0.8572
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.010G095700 [exp]	26.11	0.8288

Compare expression of checked genes

Potri.013G134433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.