Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03670 168 / 1e-45 ankyrin repeat family protein (.1) AT4G03500 144 / 4e-37 Ankyrin repeat family protein (.1) AT4G03460 142 / 2e-36 Ankyrin repeat family protein (.1) AT4G05040 134 / 5e-34 ankyrin repeat family protein (.1.2.3.4.5) AT4G03480 134 / 9e-34 Ankyrin repeat family protein (.1) AT4G03440 131 / 2e-32 Ankyrin repeat family protein (.1) AT4G14400 130 / 2e-32 ACD6 ACCELERATED CELL DEATH 6, ankyrin repeat family protein (.1.2.3) AT4G03470 129 / 6e-32 Ankyrin repeat family protein (.1) AT4G03490 127 / 5e-31 Ankyrin repeat family protein (.1.2) AT4G03450 119 / 1e-28 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G133400 [exp] 774 / 0 AT1G03670 184 / 6e-50 ankyrin repeat family protein (.1) Potri.013G134466 [exp] 740 / 0 AT1G03670 189 / 3e-51 ankyrin repeat family protein (.1) Potri.013G133700 [exp] 630 / 0 AT1G03670 197 / 1e-54 ankyrin repeat family protein (.1) Potri.013G133800 [exp] 605 / 0 AT1G03670 177 / 3e-47 ankyrin repeat family protein (.1) Potri.013G133900 [exp] 529 / 0 AT1G03670 163 / 2e-42 ankyrin repeat family protein (.1) Potri.019G101700 [exp] 523 / 0 AT1G03670 182 / 2e-49 ankyrin repeat family protein (.1) Potri.019G101500 [exp] 255 / 3e-77 AT1G03670 212 / 9e-60 ankyrin repeat family protein (.1) Potri.018G078450 [exp] 223 / 9e-66 AT1G03670 154 / 1e-39 ankyrin repeat family protein (.1) Potri.018G077250 [exp] 223 / 1e-65 AT1G03670 165 / 2e-43 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 125 / 1e-30 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10038609 [exp] 94 / 3e-21 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10037894 [exp] 96 / 8e-21 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 92 / 2e-19 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10005432 [exp] 86 / 2e-17 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 84 / 4e-17 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 76 / 4e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10026833 [exp] 72 / 4e-13 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10024440 [exp] 64 / 9e-11 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 62 / 4e-10 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.013G134500.1 pacid=42810855 polypeptide=Potri.013G134500.1.p locus=Potri.013G134500 ID=Potri.013G134500.1.v4.1 annot-version=v4.1 ATGTCTAGCGTAGCAATAAACATAGTTCAAAACTCGATTCCGAGAGATCACATGGAAAATACAAAGATAGATAGTAAGTTATATGAGTGTGTGAAGCAGG ACAATATTGAGGAATTTAAAAGCCGCGTCCAGCAACATTTAACAGAGAAGCTTGTGACTCCCTGCGGGAACTCATTACTTCATGTAGCTGTAAGCTATGG AAGTGACAATATTACATCGTATCTGGCTGGAACGTTTCCTTCTCTAATCACCATCCAAAACAGCCAGAAGGACACAATCCTTCATCTTGCTGCCAGAGAA GGAAAGGCCAGTCATACAATTAAATCTCTTGTGGAATCGAATCCGAGCTTGACGAGGAAGAAAAATACAAAGGGAAACACTCCTTTGCATGATGCAGTGA TCAAGGGCAACAAAGACCTTGCCATTTTCCTAGTTTCCAAAGATCCAGAAGTGGCCTATTACAACAACAAGAATGGCAAGTCTCCTTTATTTCTGGCAGT TGAGAACGGCAATAAGGAAGAGATACTTGATGATCTCTTGAAAACGGAAGCTTCGTTCCCTATAAAAAGTGAAGATGGTGATGCCCTACCAGAAGGAAAG TCCCCTGTTCATGCTGCCATCAAGCAACGTAACAGAGATATTTTGGAGAAAATTGAAAAGGAAAAGCCAGAGCTATTACGTCTCACCGAGGAAGGGTTGG GAAATTCACTGCATTATGCATCATCCATAGGTTTTCTCAAAGGAGTTCAATTCCTATTAAAGAAGTTTGACGATGGTGCTTATGAAACAAACCTTGAAGG CAACTATCCTATCCATCTAGCATGCAAAAGTCACTCTGTTGATGTAGTGGAGGAATTTCTTGATATATTCCCATATCCAAAAGAATTCCTCAATAAGAAA GGGCAGAACATTCTTCATGTAGCGGCCAAATATGGAAATGGCAATGTGGTTAGGTATTTACTCAAACATGACCAGAAGCTCGACGCACCGCTGCTAAATG CGATAGATGAGGATGGAAATACACCTTTGCACTTGGCAGCAAGTCATGGCCGTTGCATGGCTACATTTCTTCTTTTGCGTGACTGCCGCGTTGAACATTT CATTGTTAACAATAGAAATTGCACACCATATGAGTGGGCTGAAGAATTTTCCAAAAGATTTGAAGAGAAATACATAAAAACAGATGAAATGCGTGCCAAG GAACGAAAGCAGTTTGATTCCAAGAATAGTACCCCTGCGGATGAGATCAAGGATAAAGTAGTTGATTCAAATAAGCTAGATACAAAAGAGGCATCACCAA AGGACGAAATAAGGGTTGTGTATTTACGATTGGTGATAACATCATCGATCTTATACTTCAATGCCCGCCCTAAGAAATCCCTATTTGTCTATTTGAGCTT TTCCCCGTTACTCTACAGCCCATGTCACGAACAAAAGAGGAAATAA
AA sequence Show only first row Show all	>Potri.013G134500.1 pacid=42810855 polypeptide=Potri.013G134500.1.p locus=Potri.013G134500 ID=Potri.013G134500.1.v4.1 annot-version=v4.1 MSSVAINIVQNSIPRDHMENTKIDSKLYECVKQDNIEEFKSRVQQHLTEKLVTPCGNSLLHVAVSYGSDNITSYLAGTFPSLITIQNSQKDTILHLAARE GKASHTIKSLVESNPSLTRKKNTKGNTPLHDAVIKGNKDLAIFLVSKDPEVAYYNNKNGKSPLFLAVENGNKEEILDDLLKTEASFPIKSEDGDALPEGK SPVHAAIKQRNRDILEKIEKEKPELLRLTEEGLGNSLHYASSIGFLKGVQFLLKKFDDGAYETNLEGNYPIHLACKSHSVDVVEEFLDIFPYPKEFLNKK GQNILHVAAKYGNGNVVRYLLKHDQKLDAPLLNAIDEDGNTPLHLAASHGRCMATFLLLRDCRVEHFIVNNRNCTPYEWAEEFSKRFEEKYIKTDEMRAK ERKQFDSKNSTPADEIKDKVVDSNKLDTKEASPKDEIRVVYLRLVITSSILYFNARPKKSLFVYLSFSPLLYSPCHEQKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03670			ankyrin repeat family protein ...		Potri.013G134500 [exp]	0	1
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080100 [exp]	2.00	0.9070
AT3G05858			unknown protein		Potri.013G002000 [exp]	7.74	0.8724
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G084400 [exp]	8.66	0.8739
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	13.63	0.8834
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	15.96	0.8560
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	23.32	0.8434	Pt-AS1.3
					Potri.017G142923 [exp]	25.63	0.8688
					Potri.007G089400 [exp]	28.24	0.8484
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	36.33	0.8661	Pt-VHA1.1
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	47.37	0.8584

Compare expression of checked genes

Potri.013G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.