Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20770 605 / 0 GCL2 GCR2-like 2 (.1) AT1G52920 540 / 0 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT5G65280 321 / 2e-106 GCL1 GCR2-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403200 [exp] 574 / 0 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.005G072500 [exp] 337 / 4e-113 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 327 / 6e-109 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.011G122300 [exp] 150 / 2e-43 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033701 [exp] 628 / 0 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10020719 [exp] 539 / 0 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10025736 [exp] 311 / 3e-102 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 306 / 1e-100 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10031638 [exp] 256 / 3e-81 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10034698 [exp] 43 / 1e-05 AT1G52920 47 / 7e-08 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF05147 [poplar] [flax] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G134700.5 pacid=42811752 polypeptide=Potri.013G134700.5.p locus=Potri.013G134700 ID=Potri.013G134700.5.v4.1 annot-version=v4.1 ATGGCTGATCGATTCTTTCCCAACGTAATGCCAAGATTTGTAACAGAAGATATACAAGAAGAAGATAAAGTAACCGATGAGGATTCTCTCATGAAGCTTC TCTCAATGCCCTACACTTCACTTTCCAAGCAGGTTCAACGTTCTGGTTTGGATCTTAAAGAAACAATAGTGATGGAGACATGGGGGTTAGGTGGGCAAGT TGCGCATGATTTTACTCTTTACAGTGGAAATCTTGGCACTGCTTTGTTGCTTTATAAGAGCTATCAAGTTTCTAGTAATGAAAATGATCTCTTTCTCTGT TTGGAGATTGTTAAGGCTTGTGATTCTGCTTCTCGGGCTTCAAGGGATGTGACATTTATATGTGGGCGAGCTGGTGTTTGTGCCCTTGGGGCTGTAGCAG CAAAGCATGTTAATGATGAAGCGTTACAGAGTTACTATCTGAGTCAATTAGGAGAGATTAAGCTGTTGAGAAATCACCCTGATGAGTTGTTATATGGAAG AAGTGGATTCTTATGGGCTTGTTTGTTCCTAAATAAACACCTGGGGCAGGGGACTGTCCCTGATACGACCATTCGTGCTGTTGCGAATGAAATCATAAAA AATGGAAGAGCATTGGCGAAGAAAGGAGGTTCCCCATTAATGTATGAATGGTATGGTGAGAGGTATTGGGGTGCTGCCCATGGATTGGCAGGTATTATGA ATGTTTTATTGGATGTAGAGCTGAAACCTGATGAGTTTGAGGATGTCAAGGGCACCCTTAAATACATGATCAATAACTGCTTTCCCAGCGGCAACTACTC TACAAGTGAAGAAGATCGCAAGAGGGATGTTCTTGTGCATTGGTGTCATGGAGCACCTGGGATTGCTCTTACACTTGTCAAGGCAGTTAAGGTTTTTGGA GATAAAGAGTTTCTGGAAGCAGCTATAAATGCTGCAGAGGTAGTGTGGAACCGTGGGCTGCTCAAGCGAGTTGGAATTTGCCATGGCATCAGTGGGAATG CGTATGTGTTTCTCTCACTGTACCAGCTAACAGGCAACATAGAGTTCTTATACAAGGCCAAAGCGTTTACTTGCTTTCTGCTGGATAGAGCTCACAAACT TATATCGGCCGGAGAGATGCATGGAGGTGATAGCCCCTACTCAATGTTTGAAGGAATGGGAGGTATGGCTTATCTTTTTCTAGATATGATCGACCCATCC AAGGCTAGATTCCCTGCTTATGAACTCTAA
AA sequence Show only first row Show all	>Potri.013G134700.5 pacid=42811752 polypeptide=Potri.013G134700.5.p locus=Potri.013G134700 ID=Potri.013G134700.5.v4.1 annot-version=v4.1 MADRFFPNVMPRFVTEDIQEEDKVTDEDSLMKLLSMPYTSLSKQVQRSGLDLKETIVMETWGLGGQVAHDFTLYSGNLGTALLLYKSYQVSSNENDLFLC LEIVKACDSASRASRDVTFICGRAGVCALGAVAAKHVNDEALQSYYLSQLGEIKLLRNHPDELLYGRSGFLWACLFLNKHLGQGTVPDTTIRAVANEIIK NGRALAKKGGSPLMYEWYGERYWGAAHGLAGIMNVLLDVELKPDEFEDVKGTLKYMINNCFPSGNYSTSEEDRKRDVLVHWCHGAPGIALTLVKAVKVFG DKEFLEAAINAAEVVWNRGLLKRVGICHGISGNAYVFLSLYQLTGNIEFLYKAKAFTCFLLDRAHKLISAGEMHGGDSPYSMFEGMGGMAYLFLDMIDPS KARFPAYEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	0	1
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.017G126300 [exp]	2.82	0.8939
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	8.83	0.8867
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081466 [exp]	8.94	0.8589
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	14.69	0.8787
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	15.42	0.8602
AT1G13750			Purple acid phosphatases super...		Potri.008G096000 [exp]	18.33	0.8363
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	19.18	0.8365
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.018G086700 [exp]	19.89	0.7779
AT3G09110			Protein of unknown function (D...		Potri.010G210500 [exp]	21.16	0.8647
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	21.93	0.8434

Compare expression of checked genes

Potri.013G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.