Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 174 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 173 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 161 / 5e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 148 / 9e-42 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 140 / 3e-39 ATSEH soluble epoxide hydrolase (.1) AT2G26750 130 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 125 / 2e-33 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134900 [exp] 471 / 1e-168 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 369 / 2e-128 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 335 / 3e-115 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 196 / 2e-60 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 177 / 1e-53 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 174 / 3e-52 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 161 / 4e-47 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 160 / 1e-46 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 145 / 4e-41 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039814 [exp] 447 / 4e-159 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 356 / 2e-123 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 355 / 5e-123 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 336 / 1e-115 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 327 / 1e-111 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 318 / 1e-108 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 317 / 8e-108 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 315 / 4e-107 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 189 / 1e-57 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 180 / 2e-54 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.013G134800.1 pacid=42812755 polypeptide=Potri.013G134800.1.p locus=Potri.013G134800 ID=Potri.013G134800.1.v4.1 annot-version=v4.1 ATGGATCTGATCAAGCACACCCTTGTAGAAGTAAGAGGGCTAAAACTGCATGTGGCAGAGATTGGCACCGGTCCCAAGGTGGTGTTGTTCTTACATGGAT TCCCTGAAATATGGTACACATGGAGGTACCAGATGAATGCTGTTGCAGCTGCTGGTTATAGAGCAATAGCTATTGATTTTAGGGGCTATGGGCTATCTGA ACAGCCAGCTGAACCAGAGAAAGGGAACTTCATGGACCTTGTTGATGATGTTGTTGCCCTTCTTGATACACTTGGCATCAACAAGGTTTTTCTTATTGGG AAGGATTTTGGATCTATAACAGCATATCTAGTCGCTGTTGTGCACCCTGAGAGGGTTTCAGGTCTTGTGTCCCTCGGTATTCCTTTCTTGCTACCAGGTC CTAATTGTATTCGAAATGATCTCATGCCATCAGGTTTCTACATAACAAGGTGGCAGGAACCAGGTAGAGCTGAAGCAGATTTCGGACGCTTAGATGTCAA GACAGTGGTAAGAAACATATACATTCTCTTTTCTGGAACTGAACCACCAACAGCTAGAGATGACCAGGAAATCATGGACTTGGTTGACCCATCTACTCCT CTGCCACCGTGGTTCTCCGAAGAAGATCTTGCAGCTTATGCGTCATTATACGAGAAGTCTGGATTTCGTTTTGCATTACAGGTTCCTTACAGGTCTTTAG GCATAGATTGTGGAATTACCGATCCAAAAGTTACAGCACCAACATTACTGATCAATGGCCAGAAGGACTATCTCCTAAAGTTTGCAGGTATGGAGGACTA CACAAAAAGTGAGCAACTGAAGCATTTTGTGCCGGATTTGGACAACGTGTTCCTTGATGAAGGGAACCATTTTGTTCATGAGAATCTCCCGAAGCAGGTG AATGAGCTGATCATTAACTTCCTAAGCAAACATTGTGACTGA
AA sequence Show only first row Show all	>Potri.013G134800.1 pacid=42812755 polypeptide=Potri.013G134800.1.p locus=Potri.013G134800 ID=Potri.013G134800.1.v4.1 annot-version=v4.1 MDLIKHTLVEVRGLKLHVAEIGTGPKVVLFLHGFPEIWYTWRYQMNAVAAAGYRAIAIDFRGYGLSEQPAEPEKGNFMDLVDDVVALLDTLGINKVFLIG KDFGSITAYLVAVVHPERVSGLVSLGIPFLLPGPNCIRNDLMPSGFYITRWQEPGRAEADFGRLDVKTVVRNIYILFSGTEPPTARDDQEIMDLVDPSTP LPPWFSEEDLAAYASLYEKSGFRFALQVPYRSLGIDCGITDPKVTAPTLLINGQKDYLLKFAGMEDYTKSEQLKHFVPDLDNVFLDEGNHFVHENLPKQV NELIINFLSKHCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134800 [exp]	0	1
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.014G036900 [exp]	2.00	0.8185
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	2.23	0.8479
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	7.07	0.6928
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	8.77	0.6898
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037200 [exp]	13.41	0.6528
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	17.20	0.7000
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	19.33	0.6610
AT5G37790			Protein kinase superfamily pro...		Potri.017G126500 [exp]	23.17	0.7766
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.001G273000 [exp]	24.18	0.6202
AT3G57062			unknown protein		Potri.006G041600 [exp]	26.15	0.6944

Compare expression of checked genes

Potri.013G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.