Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 209 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 202 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 188 / 3e-57 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 179 / 2e-53 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 168 / 5e-50 ATSEH soluble epoxide hydrolase (.1) AT4G15955 165 / 8e-49 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 159 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 57 / 4e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G53050 54 / 7e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G12830 47 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134800 [exp] 519 / 0 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 394 / 4e-138 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 372 / 1e-129 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 225 / 7e-72 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 204 / 1e-63 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 202 / 7e-63 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 194 / 1e-59 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 189 / 2e-57 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 168 / 9e-50 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039814 [exp] 485 / 2e-174 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 369 / 1e-128 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 367 / 7e-128 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 355 / 3e-123 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 350 / 3e-121 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 343 / 2e-118 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 341 / 2e-117 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 334 / 8e-115 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 211 / 3e-66 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 209 / 2e-65 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.013G134900.1 pacid=42811753 polypeptide=Potri.013G134900.1.p locus=Potri.013G134900 ID=Potri.013G134900.1.v4.1 annot-version=v4.1 ATGGAACATATCAGCCACACACATGTGGAAGTGAATGGGCTAAAACTACATGTGGCAGAGATTGGCACTGGTCCTAAGGTTGTGTTGTTCCTGCATGGAT TCCCACAAATATGGTACACATGGAGGTATCAAATGATTGCTGTTGCGAAAGCTGGATATAGAGCAATAGCCTATGATTTTAGGGGCTATGGGCTCTCAGA GCTTCCAGCTGAACCTGAGAAAGGGGGCTTCATTGACCTTGTTGAGGATACGATTTCCCTTCTTGACACTCTTGGCATCAGTAAGGCTTTTCTCATAGGG ACGGACTTGGGATCAATTCCAGCATACATGGTAGCTGTTCTCTACCCGGAAAGGGTTTCCGGTGTGGTATCTCTAGGTATTCCTTTCATGCTACCAGGTC CCAGTTGTGTCCGAACTGATCTGATGTCTGAAGGTTTCTACTGCAATAGATGGAAGGAGCCAGGCAGAGCTGAAGCAGATTTCGGGCGCTTCGATATTAA GACAGTGGTAAGAAACATTTACGTTCTTTTCTCTGGAAAGGAACCACCAACAGCTAAAGAGAACCAAGAGATCATGGACTTGGTTGACCCATCAACTCCT CTACCACCATGGTTCTCTGAAGAAGATCTTGCAGTTTATGCATCCTTGTACGAGAAGTCTGGATTTCGGTATCCATTGCAGGTTCCATATAGGACTATAG GCATAGATTGCTGTGGAATAACTAATCCAAAAGTTTTGGCACCAACATTGCTGATTATGGGTGAGAAGGACTATGTGCTTGGTTTCCCGGGTATGGTAGA ATACATAAAGAGTGACCTTCTGAAGCATATAGTTCCAGATTTGGACAGTGTCTTTCTGGAAGAAGGGAACCATTTTGTTCATGAGAAACTTCCAGAGCAG GTGAATGAGATAATGATCAACTTCCTCAACAAACATAGAAAGTGA
AA sequence Show only first row Show all	>Potri.013G134900.1 pacid=42811753 polypeptide=Potri.013G134900.1.p locus=Potri.013G134900 ID=Potri.013G134900.1.v4.1 annot-version=v4.1 MEHISHTHVEVNGLKLHVAEIGTGPKVVLFLHGFPQIWYTWRYQMIAVAKAGYRAIAYDFRGYGLSELPAEPEKGGFIDLVEDTISLLDTLGISKAFLIG TDLGSIPAYMVAVLYPERVSGVVSLGIPFMLPGPSCVRTDLMSEGFYCNRWKEPGRAEADFGRFDIKTVVRNIYVLFSGKEPPTAKENQEIMDLVDPSTP LPPWFSEEDLAVYASLYEKSGFRYPLQVPYRTIGIDCCGITNPKVLAPTLLIMGEKDYVLGFPGMVEYIKSDLLKHIVPDLDSVFLEEGNHFVHEKLPEQ VNEIMINFLNKHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134900 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.009G108500 [exp]	1.41	0.8405
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Potri.006G223500 [exp]	2.44	0.7965
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	3.87	0.8307
AT5G62280			Protein of unknown function (D...		Potri.014G069000 [exp]	8.12	0.7572
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123400 [exp]	10.39	0.8100
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	17.14	0.7495
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	19.05	0.7886
AT1G30540			Actin-like ATPase superfamily ...		Potri.014G143500 [exp]	19.49	0.7718
AT3G12012		CPuORF20	conserved peptide upstream ope...		Potri.016G060550 [exp]	19.74	0.7070
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.014G080701 [exp]	21.90	0.7588

Compare expression of checked genes

Potri.013G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.