Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 748 / 0 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 451 / 2e-154 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 428 / 9e-146 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 424 / 5e-144 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 417 / 2e-141 AtPLT3 Major facilitator superfamily protein (.1) AT4G36670 412 / 9e-140 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G43330 243 / 6e-74 ATINT1 inositol transporter 1 (.1) AT5G16150 231 / 6e-69 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G17010 214 / 7e-63 Major facilitator superfamily protein (.1.2.3.4) AT5G59250 208 / 2e-60 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039100 [exp] 691 / 0 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 467 / 1e-160 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 437 / 5e-149 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 422 / 2e-143 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 420 / 1e-142 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 400 / 8e-135 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 238 / 5e-72 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 237 / 8e-72 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 224 / 4e-66 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018581 [exp] 767 / 0 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10031637 [exp] 697 / 0 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 692 / 0 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10011288 [exp] 468 / 5e-161 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 463 / 4e-159 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 461 / 7e-158 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10023640 [exp] 456 / 9e-157 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 444 / 1e-151 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 443 / 3e-151 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 440 / 3e-150 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.013G135200.1 pacid=42812674 polypeptide=Potri.013G135200.1.p locus=Potri.013G135200 ID=Potri.013G135200.1.v4.1 annot-version=v4.1 ATGGGATTGGTTGGTGTCCAAGAAAAAGGGAATGGAGAGGTTGGTTTGTCTATTGGAACCAAGAATAAGTACAGGAGAATGGATTCTGAAGTTACAGAGG ATTTTGATGATGGTTCACATCATCATCATCAAGAAAAGAGGAGTAGCAGTACTAGAAAATATGTTCTTGCTTGTGCCATTTTTGCATCCCTCAATTCTGT TCTTCTTGGCTATGATGTCGGTGTCATGAGTGGAGCAATCATATTCATTCAAGAAGATCTAAAGATAACTGAGGTACAGGAAGAAGTACTTATTGGGTGT TTAAGCATTCTTTCACTTTTTGGTAGTTTAGCTGGTGGAAGAACATCGGATATTATTGGTAGGAAATGGACAATGGCTTTAGCAGCCATTATCTTTCAAA CAGGTGCAGCTACAATGACACTTGCTCCTTCTTTTGAAGTGTTAATAATAGGAAGATTTTTGGCTGGTATTGGAATAGGGTTTGGTGTCATGATTGCCCC AATCTATATTGCTGAGATATCACCAAGTGTTACTAGAGGTTCTCTTACCTCCTTCCCAGAGATTTTCATAAACCTCGGGATATTACTCGGTTATGTCTCG AACTTTGCATTTTCAGGTCTTCCAGAACATATAAGCTGGAGGGTAATGCTTGGCGTCGGAATTCTCCCCTCATTCTTCATTGGAGCTGCACTCTTCATAA TCCCAGAGTCACCAAGGTGGTTGGTCATGAAAAACCGAGTTGAAGAAGCAAGAACAGTGCTGTTAAAGACAATTGACAATGAGGCAGAAGTGGAGGAGAG ACTTGCAGAAATCTTACTAGCTGCTGGAACTGGTTCAGCTGAGAAGTATGAAGAGAAAGCTGTGTGGCGTGAAATGTTGAGCCCTTCACCTACTCTTCGC CGAATGCTGATCACTGGTTTTGGAATCCAGTGCTTCCAACAGATCACCGGAATAGATGCAACTGTTTACTATAGCCCTGAAATCTTCCAAGGAGCTGGTA TTCAGGATAAGTCAAAGCTTCTTGCTGCAACCGTTGCTGTAGGTGTTTCGAAAACCGCTTTCATATTGGTTGCCATATTTCTCATTGACAGACTTGGGAG AAAACCTTTGCTCTATGTAAGTACAATTGGGATGACTATTTGTTTGTTCAGCATTGGTGTTACTCTCACTTTTATTGGGCAAGGGCAGGTTGGGATTGCA ATGGCAATTCTTTTTGTTTGTTCAAATGTTGCATTCTTTTCGGTGGGAATTGGCCCTGTTTGCTGGGTCTTGACATCAGAAATTTTCCCTCTAAGGCTAC GTGCTCAAGCGGCTGCACTTGGTGCAGTAGGGAATAGGGTGTGCAGTGGCTTGGTTGCCATGTCTTTCCTCTCCGTTACCCGTGCAATTTCTGTTGGTGG AACATTCTTTGTCTTTTCTGGAATTTCAGCTATTTCAGTCCTTTTTGTTTACGCACTTGTTCCAGAGACGAAAGGGAAGTCATTGGAGCAGATTGAACTT CTATTTAAGGATGAGCATGAATGGCAAGGAAGTGAAGTAGAGCTTGGAGATGTCGTGCATCTCGTGCAGAAACAATGA
AA sequence Show only first row Show all	>Potri.013G135200.1 pacid=42812674 polypeptide=Potri.013G135200.1.p locus=Potri.013G135200 ID=Potri.013G135200.1.v4.1 annot-version=v4.1 MGLVGVQEKGNGEVGLSIGTKNKYRRMDSEVTEDFDDGSHHHHQEKRSSSTRKYVLACAIFASLNSVLLGYDVGVMSGAIIFIQEDLKITEVQEEVLIGC LSILSLFGSLAGGRTSDIIGRKWTMALAAIIFQTGAATMTLAPSFEVLIIGRFLAGIGIGFGVMIAPIYIAEISPSVTRGSLTSFPEIFINLGILLGYVS NFAFSGLPEHISWRVMLGVGILPSFFIGAALFIIPESPRWLVMKNRVEEARTVLLKTIDNEAEVEERLAEILLAAGTGSAEKYEEKAVWREMLSPSPTLR RMLITGFGIQCFQQITGIDATVYYSPEIFQGAGIQDKSKLLAATVAVGVSKTAFILVAIFLIDRLGRKPLLYVSTIGMTICLFSIGVTLTFIGQGQVGIA MAILFVCSNVAFFSVGIGPVCWVLTSEIFPLRLRAQAAALGAVGNRVCSGLVAMSFLSVTRAISVGGTFFVFSGISAISVLFVYALVPETKGKSLEQIEL LFKDEHEWQGSEVELGDVVHLVQKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.013G135200 [exp]	0	1
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	6.24	0.8915
AT2G41760			unknown protein		Potri.006G051500 [exp]	6.32	0.8960
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.001G104600 [exp]	12.84	0.8893
AT2G33390			unknown protein		Potri.010G067200 [exp]	13.19	0.8346
AT1G17120		CAT8	cationic amino acid transporte...		Potri.001G378500 [exp]	13.41	0.8821	Pt-CAT8.3
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	14.69	0.8907
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	15.68	0.8843
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	17.43	0.8832	CAld5H/F5H4,Pt-FAH1.4
AT5G15710			Galactose oxidase/kelch repeat...		Potri.017G102300 [exp]	21.28	0.8046
AT1G68585			unknown protein		Potri.010G126800 [exp]	21.33	0.8833

Compare expression of checked genes

Potri.013G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.