Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03430 1471 / 0 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT4G38590 140 / 1e-33 BGAL14 beta-galactosidase 14 (.1.2) AT3G17040 83 / 5e-16 HCF107 high chlorophyll fluorescent 107 (.1.2) AT5G41770 82 / 8e-16 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 70 / 6e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G28740 63 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51110 58 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 56 / 2e-07 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G11964 45 / 0.0002 RNA binding;RNA binding (.1) AT1G04080 45 / 0.0004 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094400 [exp] 87 / 4e-17 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.010G145000 [exp] 84 / 2e-16 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.003G137200 [exp] 81 / 3e-15 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.004G035600 [exp] 64 / 4e-10 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G040000 [exp] 44 / 0.0004 AT4G28200 801 / 0.0 unknown protein Potri.016G062600 [exp] 44 / 0.001 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039811 [exp] 1521 / 0 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10018580 [exp] 1518 / 0 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10016906 [exp] 95 / 2e-19 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10037766 [exp] 85 / 2e-16 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10041477 [exp] 83 / 6e-16 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 83 / 7e-16 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10022346 [exp] 58 / 4e-08 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 57 / 7e-08 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029327 [exp] 47 / 8e-05 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1) Lus10004616 [exp] 47 / 0.0001 AT4G28200 758 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06424 [poplar] [flax] PRP1_N PRP1 splicing factor, N-terminal CL0020 [poplar] [flax] TPR PF13428 [poplar] [flax] TPR_14 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.013G135300.3 pacid=42811537 polypeptide=Potri.013G135300.3.p locus=Potri.013G135300 ID=Potri.013G135300.3.v4.1 annot-version=v4.1 ATGGTTTTCATAAGAACCCCAACAAGCACCAACAAAACCCTATACATTCACACAAACCCTACCAGCACAACCCTTCATGCCCTCAAACACCAAATTCAAC TCCAAACCCAAATCCCAATATCTCAACAAAATCTTCTTCTTCCGAAGATTTGCCAAAATCCAAATACCCTTTTGCTGTCTCAACTTGACATTGCCAATAA CACAACCCTAACCCTTCACATCCCTTTACTTGGGGGGATGCAAGCTCCGGTCGCACCGAAATCCCGACTGGATTTTTTAAATTCAAAGCCTCCAGCTAAT TATGTTGCGGGGTTAGGGCGTGGTGCTACTGGTTTTACTACTCGTTCTGATATTGGTCCGGCACGGGCTGCACCGGATTTGCCTGATAGGAATGCCGGGG CGGCAGCTGCGGGGCCAGGGGGTGGTGCGGGGCGGGGGAAAGGGGGGAAAGGAGGGGAGGACGAGGATGAGGACGAGAGTGAGGAAAAAGGTTATGATGA GAATCAGAAGTTTGATGAGTTTGAAGGAAATGATGTGGGGTTGTTTGCTTCTGCGGAGTATGATGAGGACGATAGGGAGGCAGATGCAGTGTGGGAGGAG ATTGATAAGAGGATGGATTCGAGGAGGAAGGATAGAAGGGAAGCTAGGTTAAAGGAGGAAATTGAAAAGTATAGGGCTTCGAATCCGAAGATTACTGAGC AGTTTGCTGATTTGAAGAGGAAGTTAGTAACATTGTCTGCTGAAGAGTGGGAGACTATTCCAGATATCGGGGATTATTCATTGAGGAATAAGAAGAAGAG GTTTGAGAGTTTTGTGCCGGTTCCGGATACTTTGTTGGAGAAAGCTAGACAGGAGCAGGAACATGTTACTGCATTGGATCCTAAAAGTAGGGCGGCTGGC GGAGCTGAGACGCCATGGGGGCAGACGCCAGTCACAGATTTGACTGCTGTTGGAGAAGGAAGAGGGACTGTTTTGTCATTGAAGTTGGATAGGTTGTCAG ATTCGGTTTCTGGGTTGACTGTTGTTGATCCTAAAGGGTATTTGACTGATTTGAAGAGTATGAAGATTACTAGTGATGCAGAGATTTCGGATATTAAGAA GGCTAGGTTGTTGTTGAAGAGTGTTACACAGACGAATCCAAAACATCCCCCTGGTTGGATTGCTGCGGCAAGGTTAGAAGAGGTGGCAGGGAAGATTCAG GCGGCTAGGCTGTTGATACAAAAAGGGTGCGAGGAATGTCCTACGAATGAGGATGTCTGGTTGGAGGCTTGCAGGTTGTCGAATCCTGATGAAGCGAAGG GGGTTATTGCAAAGGGAGTTAAGAGGATTCCCAATTCCGTCAAGTTGTGGATGCAGGCTGCGAAATTGGAGAATGATGATTTTACTAAGCGGAAGGTTTT GTTGAAGGGTTTAGAGCATATCCCGGATTCTGTGAGGCTGTGGAAAGCAGCGGTGGAGTTGTGTAATGAGGAGGATGCTAGGACTTTACTTGGTAGGGCA GTGGAATGCTGTCCTTTGCATGTTGAGTTGTGGTTAGCATTTGCAAGGTTGGAGACGTATGAAAATGCGAGGAAGGTGTTGAATAGGGCGAGAGAAAAGT TGCCCAAGGAGCCAGCTATATGGATTACTGCTGCCAAGTTGGAGGAGGCAAATGGGAATACACCAATGGTTGGGAAGCTTATTGAGAGAGGTATTAGGGC TTTGCAGAGAGAAGGGGTGGTGATTGATAGGGAGGAATGGATGAAGGAGGCTGAGGCAGCGGAGAGGGCTGGTTCTGTGGCAACTTGTCAAGCGATTATT AAGAACACAATTGGAATTGGAGTCGAAGAAGAGGATAGAAAGCGAACATGGGTGGCGGATGCAGAGGAGTGTAAGAAGAGGGGGTCTATTGAGACTGCTA GAGCAATTTATGCGCATGCATTGACGGTGTTTTTGACTAAGAAGAGTATTTGGCTTAAGGCAGCACAGCTTGAGAAGAGTCATGGCACAAGAGAATCCCT CGATGCATTGCTACGGAAGGCAGTTACTTACAGGCCACAGGCTGAAGTTCTATGGCTTATGGGCGCTAAAGAGAAGTGGCTTGCTGGAGATGTACCTTCT GCCCGAGCCATTCTTCAAGAAGCTTATGCTGCTATACCGAACTCTGAGGAGATTTGGCTTGCAGCATTTAAGCTTGAATTTGAGAATCATGAGCCAGAAA GAGCTAGAATGTTGCTAGCTAAGGCAAGAGAAAGAGGTGGTACAGAAAGAGTCTGGATGAAGTCTGCAATTGTAGAAAGAGAATTAGGCAATATCGAGGA GGAGAGGAAACTGCTGGATGAAGGGTTGCAGCGTTTCCCTTCATTCTTCAAACTGTGGTTGATGCTTGGGCAGCTCGAGGAGCGTCTTGGTAATTTGGAT AAAGCCAAGGAAATTTATGAGGCGGGTTTGAAGTCCTGCCCAAGTCATGTGCCTCTTTGGCTTTCTCTTGCTAACCTCGAGGAGAAAACAAATGGGCTCA GTAAAGCTCGAGCAGTGCTTACCATGGCAAGGAAGAAGAATCCTAAGAACCCTGAACTTTGGCTGGCTGCAATCCGTGCTGAATCAAGGCATGGGAATAA TAAGGAAGCTGATAACTTGATGGCAAAAGCATTGCAGGAATGTCCTACCAGTGGCATACTTTGGGCAGCATCTATTGAGATGGCTCCTCGTGCTCAACAT AAAAGCAAGAGCGCGGATGCAATTAAGAAATGTAGTCCTCATGATCCACATGTTACAACTGCTGTGGCCAAGTTGTTCTGGCGGGAAAGGAAGGTTGACA AAGCTAGGAGTTGGCTGAACAGGGCAGTTACCCTTGCCCCAGATATTGGAGATTTCTGGGCGTATTACTACAAATTTGAACTTCAGCATGGGAATGAGGA AGACCAGAAGGATGTCTTGAAGAGGTGCATTGCTGCAGAACCAAAGCATGGTGAAAAATGGCAAACGATTTCAAAGGCTGTGGAGAACTCTCACCAGCCT ACTGAAGCCATCTTGAAGAAAGTGGTGGTTGTTCTTGGGAAGGAAGAGAGTGCTTCTGAAAATAATGACCATTAG
AA sequence Show only first row Show all	>Potri.013G135300.3 pacid=42811537 polypeptide=Potri.013G135300.3.p locus=Potri.013G135300 ID=Potri.013G135300.3.v4.1 annot-version=v4.1 MVFIRTPTSTNKTLYIHTNPTSTTLHALKHQIQLQTQIPISQQNLLLPKICQNPNTLLLSQLDIANNTTLTLHIPLLGGMQAPVAPKSRLDFLNSKPPAN YVAGLGRGATGFTTRSDIGPARAAPDLPDRNAGAAAAGPGGGAGRGKGGKGGEDEDEDESEEKGYDENQKFDEFEGNDVGLFASAEYDEDDREADAVWEE IDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKRKLVTLSAEEWETIPDIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAG GAETPWGQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQ AARLLIQKGCEECPTNEDVWLEACRLSNPDEAKGVIAKGVKRIPNSVKLWMQAAKLENDDFTKRKVLLKGLEHIPDSVRLWKAAVELCNEEDARTLLGRA VECCPLHVELWLAFARLETYENARKVLNRAREKLPKEPAIWITAAKLEEANGNTPMVGKLIERGIRALQREGVVIDREEWMKEAEAAERAGSVATCQAII KNTIGIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPS ARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNIEEERKLLDEGLQRFPSFFKLWLMLGQLEERLGNLD KAKEIYEAGLKSCPSHVPLWLSLANLEEKTNGLSKARAVLTMARKKNPKNPELWLAAIRAESRHGNNKEADNLMAKALQECPTSGILWAASIEMAPRAQH KSKSADAIKKCSPHDPHVTTAVAKLFWRERKVDKARSWLNRAVTLAPDIGDFWAYYYKFELQHGNEEDQKDVLKRCIAAEPKHGEKWQTISKAVENSHQP TEAILKKVVVVLGKEESASENNDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Potri.013G135300 [exp]	0	1
AT4G02720			unknown protein		Potri.005G210900 [exp]	4.00	0.8295
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	4.58	0.8462
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	9.79	0.8352
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	10.77	0.7788
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	10.81	0.8192
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	12.84	0.8337
AT5G08450			unknown protein		Potri.004G135800 [exp]	15.19	0.8226
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	15.96	0.8294
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	17.23	0.8115
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	17.32	0.8157

Compare expression of checked genes

Potri.013G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.