Plant FIBer expression Database

Potri.013G135900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G102600
[exp]
123 / 2e-37 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G135900.1 pacid=42811676 polypeptide=Potri.013G135900.1.p locus=Potri.013G135900 ID=Potri.013G135900.1.v4.1 annot-version=v4.1
ATGAACACCACCAGCAGCCTTGTCCATGACACCATAACAAAAAACTTTAGCCGTAGAATGAATGGTTATCAGCCTCTGGATCGATATGATTCTATGCATA
GCAATGATCCTCATGACATGGGGTATAGAACTGCAAGGGCTAAGCAAAGGCAGGTTTTTCTGAAGTCTTACAGGTTAGCATCAAGAACCAAACTGAGAAG
AAGGTCAAGATCATTGAAGCTAAAGAAGGTGGTGGCTAAGGTTAGGATGATTGTGTTGTCAGTAGTTTCATTTACGAGAGGAAATGCTTTAAGATCTTGT
AATTCTAGATCATCAATCTGTGCTTCCTCTCCTATGAAACTCAACAAGTCTTGTTAG
AA sequence
>Potri.013G135900.1 pacid=42811676 polypeptide=Potri.013G135900.1.p locus=Potri.013G135900 ID=Potri.013G135900.1.v4.1 annot-version=v4.1
MNTTSSLVHDTITKNFSRRMNGYQPLDRYDSMHSNDPHDMGYRTARAKQRQVFLKSYRLASRTKLRRRSRSLKLKKVVAKVRMIVLSVVSFTRGNALRSC
NSRSSICASSPMKLNKSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G135900
[exp]
0 1
AT3G06880 Transducin/WD40 repeat-like su... Potri.002G021600
[exp]
9.21 0.6734
Potri.008G031000
[exp]
25.21 0.6429
AT1G20480 AMP-dependent synthetase and l... Potri.003G210600
[exp]
27.38 0.5866
AT3G62270 HCO3- transporter family (.1) Potri.014G116000
[exp]
29.44 0.6538
AT4G34240 ALDH3I1 aldehyde dehydrogenase 3I1 (.1... Potri.005G069800
[exp]
33.33 0.6050
AT3G16340 ABCG29, ATPDR1,... ATP-binding cassette G29, plei... Potri.003G049600
[exp]
38.78 0.5998
AT1G20480 AMP-dependent synthetase and l... Potri.003G210701
[exp]
54.95 0.5941
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.019G130200
[exp]
89.46 0.5842
AT3G06880 Transducin/WD40 repeat-like su... Potri.018G083600
[exp]
97.14 0.5311
AT2G35350 PLL1 poltergeist like 1 (.1) Potri.001G144700
[exp]
103.72 0.5591

Potri.013G135900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.