Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08415 566 / 0 Radical SAM superfamily protein (.1) AT2G20860 363 / 3e-124 LIP1 lipoic acid synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102700 [exp] 650 / 0 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1) Potri.007G078400 [exp] 367 / 2e-125 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1) Potri.005G086200 [exp] 361 / 4e-123 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041005 [exp] 555 / 0 AT5G08415 553 / 0.0 Radical SAM superfamily protein (.1) Lus10013451 [exp] 536 / 0 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1) Lus10031630 [exp] 358 / 4e-122 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1) Lus10033710 [exp] 210 / 1e-60 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10001348 [exp] 67 / 5e-13 ND 78 / 3e-17
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily CL0036 [poplar] [flax] PF16881 [poplar] [flax] LIAS_N N-terminal domain of lipoyl synthase of Radical_SAM family
Representative CDS sequence Show only first row Show all	>Potri.013G136000.3 pacid=42810875 polypeptide=Potri.013G136000.3.p locus=Potri.013G136000 ID=Potri.013G136000.3.v4.1 annot-version=v4.1 ATGATAGAGCAATCCCTTTCAAAACCTTCATTCTCATTGTCAATTCCTATTCCTCAACCCCCTAAATCCAAATCCTCCTTTTTATGCTCCTATTCAAAAA TTCGATGTGAATCGGTTGATTATCCCTCTTCATCAAAAATTGATGCAAAACACCCACAAATTTCTTCCATTAACAGCAATGGTTCTTCACCATCAGCATC TGTGGATTCGAAGAACAAGGAGAAGGGTCCATACCCATATCCAGGAGGTGGGAAGATGGGGTCATATACCGGGAGGGATCCCAATGTGAAGAAGCCAGAG TGGTTGAGGCAGAAAGCTCCTCAAGGTGAACGGTATGATGAGGTAAAAGAATCTCTGTCTCGCTTGAAGCTCAACACTGTTTGCCAAGAAGCTCAATGCC CCAACATCGGAGAGTGTTGGAATGGTGGTGGTGATGGTATTGCAACAGCGACTATTATGGTTTTAGGTGATACTTGTACCCGAGGCTGTAGATTTTGTGC TGTTAAAACCAGCAGAAACCCTCCTCCTCCTGATCCCATGGAGCCCCTTAACACTGCTTTGGCCATTGCAAGTTGGGGTGTGGATTACATTGTTATTACA AGTGTGGATCGTGATGATCTGCCAGATGGAGGAAGTGGGCATTTTGCTCAAACTGTTAGAGCTATGAAGGAACTAAAGCCAGAGATCATGGTTGAATGCT TAACTTCTGATTTTCGTGGTGACCTAAAGGCTGTAGATACTCTGGTACATTCAGGATTGGATGTGTTTGCCCACAACGTTGAGACTGTTAAACGCCTCCA ACGAATTGTTAGAGATCCTCGGGCTGGGTATGAACAGAGTTTATCAGTTTTGAAACATGCAAAAATCAGTAAGAAGGGAATGATCACAAAAACCTCTATA ATGTTGGGTCTGGGAGAATCTGATAATGAGGTGAAGGAAGTCATGGCTGATTTAAGGGCTATAGGTGTTGATATTCTGACATTTGGACAATACTTACAGC CCACTCCGTTACATTTAACTGTCAAGGAGTATGTTACACCTGAGAAGTTTGCTTTTTGGAAAGAATATGGAGAGTCTATTGGATTCCGTTATGTGGCCAG TGGACCTCTGGTTCGATCCTCGTACAGAGCAGGGGAACTCTTTGTTAAGACAATGGTGAAAGAAAGTGTTAAAGAAGCTGCTGCCATATCCTAA
AA sequence Show only first row Show all	>Potri.013G136000.3 pacid=42810875 polypeptide=Potri.013G136000.3.p locus=Potri.013G136000 ID=Potri.013G136000.3.v4.1 annot-version=v4.1 MIEQSLSKPSFSLSIPIPQPPKSKSSFLCSYSKIRCESVDYPSSSKIDAKHPQISSINSNGSSPSASVDSKNKEKGPYPYPGGGKMGSYTGRDPNVKKPE WLRQKAPQGERYDEVKESLSRLKLNTVCQEAQCPNIGECWNGGGDGIATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEPLNTALAIASWGVDYIVIT SVDRDDLPDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKISKKGMITKTSI MLGLGESDNEVKEVMADLRAIGVDILTFGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVKESVKEAAAIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08415			Radical SAM superfamily protei...		Potri.013G136000 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	1.73	0.7421	TOM1.2
AT5G15530		BCCP2, CAC1-B	biotin carboxyl carrier protei...		Potri.004G119000 [exp]	4.69	0.7357
AT1G01730			unknown protein		Potri.002G158500 [exp]	4.89	0.6601
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Potri.015G095100 [exp]	12.72	0.6468
AT3G50620			P-loop containing nucleoside t...		Potri.007G042100 [exp]	14.00	0.6230
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Potri.009G022200 [exp]	14.49	0.7319
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.006G174900 [exp]	16.24	0.6015
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Potri.002G004800 [exp]	30.98	0.5964	(),CHB903,Pt-SWI3.1,of
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	53.72	0.6245
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Potri.013G115400 [exp]	66.99	0.5927	PTP1.1

Compare expression of checked genes

Potri.013G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.