Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20875 118 / 1e-35 EPF1 epidermal patterning factor 1 (.1) AT1G34245 63 / 1e-13 EPF2 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1) AT1G71866 64 / 2e-13 unknown protein AT2G30370 43 / 1e-05 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT4G14723 38 / 0.0003 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102800 [exp] 204 / 2e-69 AT2G20875 118 / 1e-35 epidermal patterning factor 1 (.1) Potri.011G123000 [exp] 100 / 4e-28 AT2G20875 88 / 2e-23 epidermal patterning factor 1 (.1) Potri.013G116600 [exp] 70 / 2e-16 AT1G34245 102 / 2e-29 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1) Potri.013G155500 [exp] 43 / 8e-06 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 40 / 5e-05 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.008G157300 [exp] 38 / 0.0002 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018576 [exp] 130 / 7e-40 AT2G20875 120 / 2e-36 epidermal patterning factor 1 (.1) Lus10039807 [exp] 57 / 1e-11 ND 53 / 6e-11 Lus10024189 [exp] 41 / 3e-05 ND 107 / 4e-31
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G136100.1 pacid=42812027 polypeptide=Potri.013G136100.1.p locus=Potri.013G136100 ID=Potri.013G136100.1.v4.1 annot-version=v4.1 ATGAGAAAAACCAAAGCCATGAAGATTTTTGTTGCAGCATTAGTCATCATTGCTCTCTGTCTTCTTCCAATGGCCATATCAGCGAGGCATATAGGCAGGC CACGAACACACCATGGGCACCACCATTCGACACAGCCTCGAATTAAAGATGGGACAGTGGCAAAACCCAATTTTTTATACAGGGAAAGGTGGCCAGAAAA GAGAAGGGGTGCTGATACTGTCCAAATTGCAGGATCAAGTTTGCCAGATTGTTCTCATGCATGTGGGTCATGCTCACCGTGTAGACTAGTAATGGTCAGT TTTATTTGTGCTTCACTTGAAGAGGCTGAGACTTGTCCCATGGCTTATAAGTGCATGTGTGATAACAAGTCTTACCCTGTCCCATGA
AA sequence Show only first row Show all	>Potri.013G136100.1 pacid=42812027 polypeptide=Potri.013G136100.1.p locus=Potri.013G136100 ID=Potri.013G136100.1.v4.1 annot-version=v4.1 MRKTKAMKIFVAALVIIALCLLPMAISARHIGRPRTHHGHHHSTQPRIKDGTVAKPNFLYRERWPEKRRGADTVQIAGSSLPDCSHACGSCSPCRLVMVS FICASLEEAETCPMAYKCMCDNKSYPVP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.013G136100 [exp]	0	1
					Potri.002G098050 [exp]	1.41	0.9721
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101400 [exp]	1.41	0.9866
AT5G15110			Pectate lyase family protein (...		Potri.004G124100 [exp]	2.82	0.9601
					Potri.001G060750 [exp]	23.04	0.9450
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.007G086100 [exp]	24.06	0.9219
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	30.90	0.9542
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236951 [exp]	31.49	0.8491
					Potri.001G276804 [exp]	42.00	0.9509
					Potri.001G330250 [exp]	44.27	0.9509
					Potri.001G466250 [exp]	50.47	0.9509

Compare expression of checked genes

Potri.013G136100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.