Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00120 933 / 0 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) AT2G07698 543 / 0 ATPase, F1 complex, alpha subunit protein (.1) ATMG01190 539 / 0 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT4G38510 120 / 3e-29 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G76030 117 / 3e-28 ATPase, V1 complex, subunit B protein (.1) AT1G20260 115 / 2e-27 ATPase, V1 complex, subunit B protein (.1) AT5G08690 89 / 1e-18 ATP synthase alpha/beta family protein (.1) AT5G08670 89 / 1e-18 ATP synthase alpha/beta family protein (.1) AT5G08680 88 / 2e-18 ATP synthase alpha/beta family protein (.1) ATCG00480 79 / 2e-15 ATCG00480.1, ATPB ATP synthase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G062242 [exp] 560 / 0 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.001G275604 [exp] 153 / 6e-45 ATCG00120 156 / 1e-46 ATP synthase subunit alpha (.1) Potri.012G059700 [exp] 123 / 4e-34 ATCG00120 125 / 1e-35 ATP synthase subunit alpha (.1) Potri.004G177500 [exp] 114 / 3e-27 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.009G137800 [exp] 113 / 7e-27 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.013G162800 [exp] 80 / 9e-16 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.010G116600 [exp] 80 / 1e-15 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.008G126600 [exp] 79 / 3e-15 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G253500 [exp] 78 / 6e-15 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004894 [exp] 309 / 1e-103 ATCG00120 345 / 6e-118 ATP synthase subunit alpha (.1) Lus10027827 [exp] 117 / 3e-28 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10005057 [exp] 117 / 3e-28 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10024002 [exp] 117 / 7e-28 AT4G38510 954 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10035263 [exp] 87 / 6e-18 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 87 / 6e-18 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 87 / 7e-18 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 84 / 5e-17 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10034836 [exp] 79 / 4e-15 AT1G78900 1210 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 78 / 6e-15 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00006 [poplar] [flax] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0023 [poplar] [flax] PF00306 [poplar] [flax] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain CL0275 [poplar] [flax] HAS-barrel PF02874 [poplar] [flax] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain
Representative CDS sequence Show only first row Show all	>Potri.013G138000.1 pacid=42811675 polypeptide=Potri.013G138000.1.p locus=Potri.013G138000 ID=Potri.013G138000.1.v4.1 annot-version=v4.1 ATGGTAACCATTCGAGCCGACGAGATTAGTAATATTATCCGTGAACGTATTGAGCAATATAATAGGGAAGTAAAGATTGTAAATACTGGGACCGTACTTC AAGTGGGTGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTGGTAGAATTTGAAGAGGGTACGATAGGCATTGCTCTTAATTT GGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACGGCTTGATGATACAAGAGGGAAGTTCTGTAAAAGCAACAGGAAAAATTGCTCAGATACCAGTG AGTGAGGCGTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCCATTGACGGTCGAGGTGCAATTTCATCTTCTGAATCTCGGTTAATTGAATCTCCCG CTCCAGGGATTATTTCTAGGCGTTCCGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGACTCAATGATCCCTATAGGACGTGGTCAGCGAGAATT AATTATTGGGGACAGGCAGACCGGTAAAACAGCAGTAGCCACAGATACGATTCTCAATCAACAAGGGCAAAATGTAATATGTGTTTATGTAGCTATTGGT CAAAAAGCATCTTCTGTGGCTCAGGTAGTAAATGCTTTACAGGAAAGAGGAGCAATGGAGTATACTATTGTGGTAGCCGAAACGGCGGATTCCCCGGCTA CACTACAATATCTCGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGACACACTTTAATTATTTATGATGATCTTTCCAAACA AGCGCAAGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCTGGACGTGAAGCTTATCCAGGAGATGTTTTTTATTTGCATTCACGCCTTTTGGAA AGAGCCGCTAAACCAAGTTCTTCTTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGAGACGTTTCGGCTTATATTCCTACTA ATGTAATTTCCATTACAGACGGACAAATATTCTTATCCGCCGATCTATTCAATGCTGGAATCAGGCCTGCTATTAATGTGGGTATTTCGGTCTCCAGAGT AGGATCCGCAGCTCAAATTAAGGCTATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTGGCGCAATTCGCAGAATTAGAAGCCTTTGCGCAATTCGCT TCGGATCTTGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTGCGTGAGTTGCTCAAACAATCCCAAGCCGCCCCTTTCACGGTGGCAGAAC AGATAATGACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACCTACTTAAAAAC GAGTAAAACTCAGTTTCAAGAAATTATATCTTCTACAAAAACATTTACTGAAGAAGCGGAAGCCCTTTTGAAAGAAGCCATTCAGGAACAGATGGAACGT TTTCTACTTCAGGAACAGGTATAA
AA sequence Show only first row Show all	>Potri.013G138000.1 pacid=42811675 polypeptide=Potri.013G138000.1.p locus=Potri.013G138000 ID=Potri.013G138000.1.v4.1 annot-version=v4.1 MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPV SEAYLGRVINALAKPIDGRGAISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIG QKASSVAQVVNALQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE RAAKPSSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFA SDLDKATQNQLARGQRLRELLKQSQAAPFTVAEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLKEAIQEQMER FLLQEQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Potri.013G138000 [exp]	0	1
ATCG01000		ATCG01000.1, YC...	Ycf1 protein (.1)		Potri.002G008176 [exp]	3.16	0.9142
ATCG00140		ATCG00140.1, AT...	ATP synthase subunit C family ...		Potri.019G028500 [exp]	10.95	0.8881
ATCG00140		ATCG00140.1, AT...	ATP synthase subunit C family ...		Potri.013G138490 [exp]	11.31	0.8758
ATCG00130		ATCG00130.1, AT...	ATPase, F0 complex, subunit B/...		Potri.013G137900 [exp]	23.49	0.9094
ATCG00630		ATCG00630.1, PS...	PSAJ (.1)		Potri.003G067501 [exp]	24.37	0.8447
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.013G142760 [exp]	26.49	0.8596
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.006G040900 [exp]	31.84	0.7397
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Potri.003G169700 [exp]	36.24	0.7568
ATCG01100		ATCG01100.1, ND...	NADH dehydrogenase family prot...		Potri.013G074800 [exp]	36.98	0.8845
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074750 [exp]	37.78	0.8751

Compare expression of checked genes

Potri.013G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.