Plant FIBer expression Database

Potri.013G139080 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00150 427 / 8e-154 ATCG00150.1, ATPI ATPase, F0 complex, subunit A protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G028601
[exp]
61 / 1e-12 ATCG00150 67 / 1e-15 ATPase, F0 complex, subunit A protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00119 ATP-synt_A ATP synthase A chain
Representative CDS sequence
>Potri.013G139080.1 pacid=42811384 polypeptide=Potri.013G139080.1.p locus=Potri.013G139080 ID=Potri.013G139080.1.v4.1 annot-version=v4.1
ATGAATGTTCTATCATATTCCATTAACACATTAAAAGGGTTATATGAAATATCTGGTGTGGAAGTAGGCCAGCATTTCTATTGGAAAATAGGCGGTTTCC
AAGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGTTATCTTATTAGGTTCAGCCATTGTAACTGTTCGGAATCCACAAACCATTCCTACTGA
CGGTCAGAATTTCTTCGAATATATCCTTGAATTTATTCGAGATGTGAGCAAAACCCAGATTGGAGAGGAATATGGTCCATGGGTTCCCTTTATTGGAACT
TTGTTTCTATTTATTTTTGTTTCTAATTGGTCAGGGGCGCTTTTACCTTGGAAAATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCCACGAATGATA
TAAATACTACCGTTGCTTTAGCTTTACTTACGTCAATAGCATATTTTTATGCGGGCCTTAGCAAAAAAGGATTAGGTTATTTCGGTAAATACATACAACC
AACTCCAATCCTTTTACCCATTAACATTTTAGAAGATTTCACAAAACCTTTATCACTTAGCTTTCGACTTTTTGGAAATATATTAGCGGATGAATTAGTA
GTTGTTGTTCTTGTTTCTTTAGTACCTTCAGTGGTTCCTATACCTGTCATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTCTTATTTTTGCAACTT
TAGCTGCGGCTTATATAGGTGAATCCATGGAGGGACACCATTGA
AA sequence
>Potri.013G139080.1 pacid=42811384 polypeptide=Potri.013G139080.1.p locus=Potri.013G139080 ID=Potri.013G139080.1.v4.1 annot-version=v4.1
MNVLSYSINTLKGLYEISGVEVGQHFYWKIGGFQVHAQVLITSWVVIVILLGSAIVTVRNPQTIPTDGQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGT
LFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELV
VVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00150 ATCG00150.1, AT... ATPase, F0 complex, subunit A ... Potri.013G139080
[exp]
0 1
ATCG00160 ATCG00160.1, RP... ribosomal protein S2 (.1) Potri.013G139670
[exp]
4.58 0.9866
ATCG00160 ATCG00160.1, RP... ribosomal protein S2 (.1) Potri.019G028700
[exp]
5.91 0.9849
Potri.013G142972
[exp]
6.48 0.9763
ATCG00730 ATCG00730.1, PE... photosynthetic electron transf... Potri.011G074600
[exp]
6.70 0.9655
ATCG00150 ATCG00150.1, AT... ATPase, F0 complex, subunit A ... Potri.019G028601
[exp]
10.58 0.9710
ATCG01090 ATCG01090.1, ND... NADPH dehydrogenases (.1) Potri.013G074950
[exp]
11.83 0.9603
ATCG00360 ATCG00360.1, YC... Tetratricopeptide repeat (TPR)... Potri.013G141700
[exp]
13.49 0.9656
ATCG00710 ATCG00710.1, PS... photosystem II reaction center... Potri.019G028200
[exp]
13.96 0.9667
ATCG01100 ATCG01100.1, ND... NADH dehydrogenase family prot... Potri.013G074800
[exp]
15.09 0.9621
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.019G027720
[exp]
15.16 0.9694

Potri.013G139080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.