Plant FIBer expression Database

Potri.013G139670 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00160 399 / 7e-143 ATCG00160.1, RPS2 ribosomal protein S2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G028700
[exp]
395 / 1e-141 ATCG00160 343 / 2e-121 ribosomal protein S2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013628
[exp]
347 / 1e-122 ATCG00160 360 / 3e-128 ribosomal protein S2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00318 Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence
>Potri.013G139670.1 pacid=42811662 polypeptide=Potri.013G139670.1.p locus=Potri.013G139670 ID=Potri.013G139670.1.v4.1 annot-version=v4.1
ATGATAAGAAGATATTGGAACATTAATTTGAAAGAGATGTTGGAAACAGGAGTTCATTTTGGTCATGCTACTAGAAAATGGAATCCGAAAATGGCACCTT
ATATCTCTGCAAAGCGTAAGGGTATTCATATTACAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCGTGTGATTTGGTTTTTGATGCAGCAAGTAG
GAGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCTGATCCAGTAGCGCGGGCTGCAATAAGAGCTCGGTGTCATTATGTTAATAAAAAATGG
CTAGGCGGCCTTTTAACGAATTGGTCCACTACAGAAATGAGACTTCAAAAGTTCAGGGACTTGAGAATGGAACAAAAGACAGGGGGAATCCACCGCCTTC
CGAAAGGGGATGCGGCTCGATTAAAGAGACAGTTATTTCACTTGCAAACATATTTGGGCGGGATTAAATATATGACAGGGTTACCCGATATTGTAATAAT
CGTTGATCAGCAAGAAGAATATATGGCTCTTCAAGAATGTATCACTTTGGGAATTCCAACAATTTGTTTAATTGATACAAACTGTGACCCGGATCTCACA
GATATTTCGATTCCAGCGAATGATGACGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCGATTTGTGAAGGGCGTTCTAGCTATATAC
GAAATCCCTGA
AA sequence
>Potri.013G139670.1 pacid=42811662 polypeptide=Potri.013G139670.1.p locus=Potri.013G139670 ID=Potri.013G139670.1.v4.1 annot-version=v4.1
MIRRYWNINLKEMLETGVHFGHATRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKAADPVARAAIRARCHYVNKKW
LGGLLTNWSTTEMRLQKFRDLRMEQKTGGIHRLPKGDAARLKRQLFHLQTYLGGIKYMTGLPDIVIIVDQQEEYMALQECITLGIPTICLIDTNCDPDLT
DISIPANDDAIASIRLILNKLVFAICEGRSSYIRNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00160 ATCG00160.1, RP... ribosomal protein S2 (.1) Potri.013G139670
[exp]
0 1
ATCG00160 ATCG00160.1, RP... ribosomal protein S2 (.1) Potri.019G028700
[exp]
1.00 0.9988
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.013G140260
[exp]
3.46 0.9892
ATCG00150 ATCG00150.1, AT... ATPase, F0 complex, subunit A ... Potri.013G139080
[exp]
4.58 0.9866
Potri.007G062041
[exp]
6.48 0.9697
ATCG01110 ATCG01110.1, ND... NAD(P)H dehydrogenase subunit ... Potri.013G074650
[exp]
6.70 0.9809
Potri.013G142972
[exp]
8.36 0.9763
ATCG00710 ATCG00710.1, PS... photosystem II reaction center... Potri.019G028200
[exp]
8.66 0.9757
ATCG00150 ATCG00150.1, AT... ATPase, F0 complex, subunit A ... Potri.019G028601
[exp]
9.16 0.9781
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.019G027720
[exp]
10.48 0.9805
ATCG00280 ATCG00280.1, PS... photosystem II reaction center... Potri.008G208700
[exp]
10.67 0.9714

Potri.013G139670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.