Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00170 2103 / 0 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1) AT3G57660 63 / 2e-09 NRPA1 nuclear RNA polymerase A1 (.1) AT5G60040 52 / 4e-06 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 51 / 1e-05 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G028101 [exp] 565 / 0 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1) Potri.003G067266 [exp] 459 / 7e-152 ATCG00170 427 / 8e-141 DNA-directed RNA polymerase family protein (.1) Potri.019G027720 [exp] 246 / 8e-76 ATCG00170 115 / 4e-31 DNA-directed RNA polymerase family protein (.1) Potri.019G027580 [exp] 228 / 2e-69 ATCG00170 164 / 5e-48 DNA-directed RNA polymerase family protein (.1) Potri.003G067332 [exp] 135 / 1e-37 ATCG00170 107 / 6e-29 DNA-directed RNA polymerase family protein (.1) Potri.009G133701 [exp] 134 / 3e-37 ATCG00170 127 / 7e-36 DNA-directed RNA polymerase family protein (.1) Potri.006G055300 [exp] 61 / 7e-09 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.001G341900 [exp] 54 / 1e-06 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 52 / 4e-06 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040493 [exp] 57 / 1e-07 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 54 / 1e-06 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10015971 [exp] 54 / 1e-06 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 51 / 9e-06 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 51 / 1e-05 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10028403 [exp] 49 / 5e-05 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04998 [poplar] [flax] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5
Representative CDS sequence Show only first row Show all	>Potri.013G140260.1 pacid=42811116 polypeptide=Potri.013G140260.1.p locus=Potri.013G140260 ID=Potri.013G140260.1.v4.1 annot-version=v4.1 ATGGAGGTATTTATGGCCGAACGGGCCAATCTCTTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGAATTATTAGTCGATTCATAGATCACT TCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTGGGTTTCCATCAAGCCACTGCTACATCTATTTCATTAGGAATTGATGATCTTTT AACAATACCTTCGAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAATGTACACGCGATAGAAAAA TTACGTCAATCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCGAATTTTAGGATGACGGAACCCTTTAATCCAGTCCATA TAATGTCCTTTTCGGGAGCTAGGGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCGGATCCACAAGGACAAATGATTGATTT ACCCATTCAAAGCAATCTACGGGAAGGATTGTCTTTAACAGAATATATCATTTCTTGCTATGGAGCCCGAAAAGGAGTTGTGGATACTGCTGTACGAACA TCAGATGCTGGATATCTTACGCGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACAGACTGTGGCACCACCCGAGGGATTTCTGTGAGTT CTCGAAATGGAATGATACCGGAAAGAATTTTTATTCAAACATTAATAGGTCGTGTATTAGCAGACAATATATATATGGGTCTACGATGCATTGCCACTCG AAATCAAGATATTGGGATTGGACTTGTCAATCGATTCATCACCTTTCGAACACAACCAATATCTATTCGAACTCCTTTTACTTGTAGAAGTACGTCCTGG ATCTGTCGATTATGTTATGGTCGAAGTCCTACTCATGGCGACCTGGTGGAATTGGGAGAAGCTGTAGGTATTATTGCGGGTCAATCCATTGGAGAGCCGG GTACTCAACTAACATTAAGAACGTTTCATACCGGCGGAGTATTCACAGGGGGTACTGCCGAACATGTACGAGCCCCCTCTAATGGAAAAATCAAATTTAA TAAGGGTTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCTTTTCTCTGTTCTATGGACTTATATGTAACTATTGAGAGTCAAGATATTATACAC AACGTGACTATTCCACCAAAAAGTTTTCTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAAATTCGCTCGGGAACATACACTT TGAATTTTACAGAGAGGGTTCGAAAACATATTTATTCCGATTCAGAAGGAGAAATGCACTGGAGTACTGATGTATACCATGCATCTGAATTTACATATAG TAATGTCCATCTTTTACCAAAAACAAGCCATTTATGGATATTGTCAGGGGGTTCGTGCAGATCCAGTATAGTCCCGTTTTCACTACACAAGGATCAAGAT CAAATAAACGTTCATTCTCTTTCTGTCGAAAGAGGATATATTTCTAACCCTTCAGTAAATAATGATAAAGTTAAACACAAATTCTTTAGTTCATATCTTT CGAGTAAAAGTAAAAAAAAAAGTAGGATTCTTGATTATTCAGACCTTAATCGAATGATATGTACTGGTTTCATATATCCTACTATTCTCCACGAGAATTC TGATTTATTGGCAAAGAGGCGAAAAAATAGATTTATCATCCCATTCCAATCGATTCAAGAAAAAGAACTAATGTCCCATTCCGATATCTTGATTGAAATA CCTATAAATGGCATTTTCCGTAGAAATAGTATTTTTGCTTATTTTGACGATCCCCAATACCGAAGAAAGAGTTCAGGAATTACTAAATATGTGGCTATAG GGGTGCATTCAATTGTCAAAAAAGAGGATTTAGTTGAGTATCGAGGAGTCAAAGAATTTCAGCCAAAATACCAAATGAAAGTAGATCGCTTTTTTTTCAT TCCCGAGGAAGTGTATATTTTACCCGAATCTTCTTCCCTAATGGTACGGAACAATAGTATCATTGGAGTCGATACACAAATCACTTTAAATACAAAAAGT CGAGTAGGGGGGTTGATCCGAATAGAGAGAAAAAAAAAAAAAATGGAACTTAAAATCTTTTCTGGAGATATCCATTTTCCGAGGGCGACAGATAAGATAT CCCGATACAGTGGTATCTTGATACCACCAGGAACAGTAAAAACAAATTCTAAGGAGTCGAAAAAGGTGAAAAATTGGATCTATGTCCAACGGATCACACC TACCAAGAAAAAGTCTTTTGTTTTGGTTCGACCAGTACTCATATATGAAAGAGGGGACGGTATAAATTTAGAAAGACTTTTTCCGCCGGATTTATTGCAG GAAAAAGAGAATCTGAAACTTCGAATTGTCAATTATATTCTTTATGGAAATGGTAAACCAATTCAGGGAATTTCTAACACAAGTATTCAATTAGTTCGTA CTTGTTTAGTGTTGAATTGGAACCAAGACAAAAAAAGTTCTTCTATCGAAGAGGCTCGTGTTTATTTTGTTGAAGTAAGTATAAATGGTCTGATTCGTGA TTTCCTAAGAATCCACTTAGGGAAATCACGCATTTCCTATATCAGCAGAAAAAGGAACGATCCATCAGGTTTGGGATTGATCTCTGATAATGGGCCAGAT CGCACCAATATTAATCCGTTTTATTCCATTTATTCCAAGACAAGGATTCCACAATCACTTAAACAAAATCAAGGAACTATTAGTATTAGTACGTTGTTGA ATAGAAATATGGAATGTCAATCTTTGATAATTTTGTCATCATCTAATTGTTTTCGAATGGATCCATCCAACGGTGTAAAATCTTATAATGTAATAAAAGA ATCAACTAAAAGAGATCCTATAATTCCAATTAGGAATTTGTTGGGCCCTTTAGGAACAGCCCTTCAAATTGCGAATTTTTATTCATTTTACCATTTACTA ACTCATAATCAGATCTCGGTAATTAAATATTTGAAACTTGACAATTTAAAATTAAAACAGACTTCAAAAGTACTAAAATATTATTTAATGGATGAGAACG GTAGAATTGTTAATCACGATCCGTACAGTAACAACGTTTTGAATCCATTCAAATTGAATTGGTATTTTCTCCATCATAATTATCATCATAATTATTGTGA AGAAACATTCACAATAATTAACCTGGGACAGTTTATTTGTGAAAATGTATGTATGACAAAAAACGGACCACGCCTAAAATCAGGTCAAGTTCTAATTGTT CACGCCGACTCTGTAATACTAAGATTGGCTAAGCCCTATTTGGCCACTCCAGGAGCAACTGTTCATGGCCATTATGGGGAAATCCTTTATGAAGGAGATA CATTAGTTACATTTATATATGAAAAATCGAGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTGGAACAGGTGTTAGAAGTGCGCTCAATTGATTCAAT ATCGATAAACCTAGAAAAGAGAGTGGAGAATTGGAACGAGTGTATAACAAGAATTGTTGGAATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATA GTGCAAAGTCGTATTTCCTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTACAGATCCATAATAGGCATATAGAAATTATTGTACGCCAAA TAACATCAAAAGTCCTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCCGGAGAACTAATTGGATTGTTGCGGGCGGAACGAGCGATGCGCGCTTT GGAAGAAGCGATCTGTTACCGAACCGTATTCTTGGGAATAACGAGAGCATCTCTGAGTACTCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTGCT CGCGTTTTAGCAAAAGCTGCTCTCCGCGGTCGTATCGATTGGCTGAAAGGCCTGAAAGAAAACGTCGTTCTAGGTGGTATGATACCCGTTGGTACCGGAT TCAAAGGATTAGCGCACCGCTCAAGCCAACATAAGATCATTCCTTTCAAAACCAAAAAGAAGAATTTATTCGAGGGGGAAATGAGAGATATTTTGTTTCA CCACAGAGAGTTATTTGATTCTTGCATTTCAAAAAATTTCTATAATATATCAGAACAATCATTTATAGGATTTAACGATTCCTAA
AA sequence Show only first row Show all	>Potri.013G140260.1 pacid=42811116 polypeptide=Potri.013G140260.1.p locus=Potri.013G140260 ID=Potri.013G140260.1.v4.1 annot-version=v4.1 MEVFMAERANLFFHNKVIDGTAIKRIISRFIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAIEK LRQSIEIWYATSEYLRQEMNPNFRMTEPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRT SDAGYLTRRLVEVVQHIVVRRTDCGTTRGISVSSRNGMIPERIFIQTLIGRVLADNIYMGLRCIATRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSW ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNKGLVHPTRTRHGHPAFLCSMDLYVTIESQDIIH NVTIPPKSFLLVQNDQYVESEQVIAEIRSGTYTLNFTERVRKHIYSDSEGEMHWSTDVYHASEFTYSNVHLLPKTSHLWILSGGSCRSSIVPFSLHKDQD QINVHSLSVERGYISNPSVNNDKVKHKFFSSYLSSKSKKKSRILDYSDLNRMICTGFIYPTILHENSDLLAKRRKNRFIIPFQSIQEKELMSHSDILIEI PINGIFRRNSIFAYFDDPQYRRKSSGITKYVAIGVHSIVKKEDLVEYRGVKEFQPKYQMKVDRFFFIPEEVYILPESSSLMVRNNSIIGVDTQITLNTKS RVGGLIRIERKKKKMELKIFSGDIHFPRATDKISRYSGILIPPGTVKTNSKESKKVKNWIYVQRITPTKKKSFVLVRPVLIYERGDGINLERLFPPDLLQ EKENLKLRIVNYILYGNGKPIQGISNTSIQLVRTCLVLNWNQDKKSSSIEEARVYFVEVSINGLIRDFLRIHLGKSRISYISRKRNDPSGLGLISDNGPD RTNINPFYSIYSKTRIPQSLKQNQGTISISTLLNRNMECQSLIILSSSNCFRMDPSNGVKSYNVIKESTKRDPIIPIRNLLGPLGTALQIANFYSFYHLL THNQISVIKYLKLDNLKLKQTSKVLKYYLMDENGRIVNHDPYSNNVLNPFKLNWYFLHHNYHHNYCEETFTIINLGQFICENVCMTKNGPRLKSGQVLIV HADSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRVENWNECITRIVGIPWGFLIGAELTI VQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAMRALEEAICYRTVFLGITRASLSTQSFISEASFQETA RVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLAHRSSQHKIIPFKTKKKNLFEGEMRDILFHHRELFDSCISKNFYNISEQSFIGFNDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140260 [exp]	0	1
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027720 [exp]	2.44	0.9924
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.019G028700 [exp]	3.00	0.9909
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.013G139670 [exp]	3.46	0.9892
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.008G208700 [exp]	6.16	0.9753
ATCG00190		ATCG00190.1, RP...	RNA polymerase subunit beta (....		Potri.013G142232 [exp]	6.92	0.9839
ATCG00150		ATCG00150.1, AT...	ATPase, F0 complex, subunit A ...		Potri.019G028601 [exp]	8.48	0.9798
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027580 [exp]	8.83	0.9651
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.003G067332 [exp]	9.53	0.9788
ATCG01120		ATCG01120.1, RP...	chloroplast ribosomal protein ...		Potri.012G027700 [exp]	11.66	0.9762
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140850 [exp]	14.00	0.9775

Compare expression of checked genes

Potri.013G140260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.