Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00180 1181 / 0 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT4G35800 101 / 1e-21 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT5G60040 100 / 1e-21 NRPC1 nuclear RNA polymerase C1 (.1.2) AT3G57660 80 / 4e-15 NRPA1 nuclear RNA polymerase A1 (.1) AT1G63020 70 / 5e-12 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 60 / 5e-09 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G028000 [exp] 571 / 0 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G027860 [exp] 149 / 1e-42 ATCG00180 145 / 6e-42 DNA-directed RNA polymerase family protein (.1) Potri.001G341900 [exp] 101 / 8e-22 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 100 / 2e-21 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 90 / 3e-18 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.001G111300 [exp] 61 / 3e-09 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.003G196900 [exp] 59 / 1e-08 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 56 / 1e-07 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009499 [exp] 145 / 1e-40 ATCG00180 191 / 2e-58 DNA-directed RNA polymerase family protein (.1) Lus10041856 [exp] 102 / 4e-22 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10015971 [exp] 100 / 3e-21 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 99 / 5e-21 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 96 / 5e-20 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10040493 [exp] 89 / 8e-18 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 88 / 1e-17 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10002955 [exp] 63 / 6e-10 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10000051 [exp] 56 / 4e-09 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2) Lus10002748 [exp] 59 / 2e-08 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00623 [poplar] [flax] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF04983 [poplar] [flax] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [poplar] [flax] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
Representative CDS sequence Show only first row Show all	>Potri.013G140850.1 pacid=42812283 polypeptide=Potri.013G140850.1.p locus=Potri.013G140850 ID=Potri.013G140850.1.v4.1 annot-version=v4.1 ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATCAGTTTCGCCTCAACAAATAAGTGCTTGGACTAATAAAATCCTACCTAATGGAGAGATTG TTGGAGAGGTTACAAAACCCTATACTTTTCATTACAAAACTAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGTGG AATTTGTGCTTGTGGAAATTATCGAGTAATTGGCGATGAAAAAGAAGAACCAAAATTTTGTGAACAATGCGGGGTCGAATTTGTTGATTCTCGGATACGA AGATATCAAATGGGCTACATCAAACTGGCATGCCCAGTAACTCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCCAATCTTTTAGATAAACCTC TTAAACAATTAGAAGGCTTAGTATACTGCGATTTTTCTTTTGCTAGGCCCATAGCCAAAAAACCTACTTTCTTACGATTACGAGGTTCGTTCGAATATGA AATACAATCTTGGAAATACAGTATTCCGCTTTTTTTTACTACCCAAGGGTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCTGGTGCTATCCGA GAACTATTAGCCGATCTGGATTTGCGAATTATTCTAGATTATTCGTCGTTAGAATGGAAAGAATTAGGGGAAGAAGGACCCACCGGGAATGAATGGGAAG ATCGAAAAGTTGGAAGAAGAAAGGATTTTTTAGTTAGACGCGTGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATG TCTATTACCAGTTCTTCCTCCCGAATTGAGACCCATCATTCAGATAGATGGAGGTAAACTAATGAGTTCAGATATTAATGAACTCTATAGAAGAGTTATT TATCGGAACAATACTCTTACGGATCTATTAACAACAAGTAGATCTACGCCAGGGGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTAGATA CACTTCTTGATAATGGAATCCGCGGACAACCAATGAGAGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGCAAAGAGGGAAGGTT TCGTGAGACTATGCTTGGCAAACGGGTTGATTATTCGGGGCGTTCTGTCATTGTCGTAGGACCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAA ATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCAAACATAGGAGTTGCTAAGAGTAAAATTCGAGAAAAAG AGCCAATTGTATGGGGAATACTTCAGGAGGTTATGCGCGGACATCCTATATTGCTGAATAGAGCGCCTACTCTGCATAGATTAGGCATACAGGCATTCCA ACCCATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTCGTAAGGGATTCAATGCAGATTTTGATGGGGATCAAATGGCTGTTCATGTACCT TTATCGTTGGAGGCTCAAGCGGAGGCTCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATCGGAGATCCCATTTCCGTACCAACTCAAG ATATGCTTATGGGGCTCTATGTATTAACAAGCGGGAATCGTCGAGGTATTTGCGCAAATAGGTATAATCCGTTTAATTGCAGAAATTTTCAAAATGAAAA AATTGACGCTAATGCTAATAAGGATAAGTATATAAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTA GAGAGCCCCTTGTGGCTTCGGTGGCAACTAGATCAAGGCCTTATTGCTTCAAGAGAAGCTCCCATCGAAGGTCACTTTGGATCTTTAGGTACCTATCATG AGATTTATGGACACTATCTAATAGTAAGAAGTATAAAAAAAAAAATTCTTTCTATATACATTCGAACCACTGTTGGTCATATTTATCTTTATCGAGAAAT CGAAGAAGCTATACAAGGGTTTTGCCAAGCCTGCTCAGACGGTACCTAA
AA sequence Show only first row Show all	>Potri.013G140850.1 pacid=42812283 polypeptide=Potri.013G140850.1.p locus=Potri.013G140850 ID=Potri.013G140850.1.v4.1 annot-version=v4.1 MIDRYKHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIR RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKQLEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIR ELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPRE IAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWGILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVP LSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPFNCRNFQNEKIDANANKDKYIKEPFFCNSYDAIGAYRQKRINL ESPLWLRWQLDQGLIASREAPIEGHFGSLGTYHEIYGHYLIVRSIKKKILSIYIRTTVGHIYLYREIEEAIQGFCQACSDGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140850 [exp]	0	1
ATCG00190		ATCG00190.1, RP...	RNA polymerase subunit beta (....		Potri.013G142232 [exp]	1.00	0.9941
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027860 [exp]	2.82	0.9890
					Potri.011G074501 [exp]	3.74	0.9836
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027720 [exp]	6.48	0.9845
ATCG00730		ATCG00730.1, PE...	photosynthetic electron transf...		Potri.013G088900 [exp]	7.14	0.9741
					Potri.013G142972 [exp]	7.74	0.9767
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.003G067332 [exp]	8.12	0.9795
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G028101 [exp]	9.48	0.9796
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.003G067266 [exp]	10.81	0.9782
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G028000 [exp]	11.83	0.9695

Compare expression of checked genes

Potri.013G140850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.