Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) AT5G54160 236 / 4e-75 ATOMT1 O-methyltransferase 1 (.1) AT4G35150 222 / 4e-70 O-methyltransferase family protein (.1) AT1G51990 221 / 3e-69 O-methyltransferase family protein (.1.2) AT1G77520 200 / 5e-61 O-methyltransferase family protein (.1) AT5G53810 194 / 2e-58 O-methyltransferase family protein (.1) AT1G63140 190 / 6e-57 O-methyltransferase family protein (.1.2) AT1G77530 179 / 5e-53 O-methyltransferase family protein (.1) AT3G53140 177 / 3e-52 O-methyltransferase family protein (.1) AT1G21130 176 / 8e-52 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G143800 [exp] 737 / 0 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 733 / 0 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 501 / 2e-179 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.009G139700 [exp] 286 / 7e-95 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.009G139800 [exp] 269 / 2e-88 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 252 / 2e-81 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 248 / 7e-80 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 247 / 2e-79 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 244 / 3e-78 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023987 [exp] 260 / 2e-84 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10025098 [exp] 242 / 2e-77 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10018629 [exp] 237 / 2e-75 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10023986 [exp] 236 / 3e-75 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10018628 [exp] 229 / 2e-72 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10015311 [exp] 226 / 3e-71 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10033656 [exp] 222 / 2e-69 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 221 / 5e-69 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10013945 [exp] 219 / 1e-68 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10032929 [exp] 211 / 2e-65 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.013G141301.1 pacid=42812545 polypeptide=Potri.013G141301.1.p locus=Potri.013G141301 ID=Potri.013G141301.1.v4.1 annot-version=v4.1 ATGGCATCACAAGAGGCAGAAGCATTTTTCAAAAGCCAATTTGAAATATTCCAACTCTCGCTTGGTTTTGTTGATTCTATGGCTTTAAAGTGTGCGGTGG AGCTTAGACTGCCAGAAATAATAAATTCTCACGGTCGTCCAATCTCTCTGTCCCAAATAGCTTCAGGTATTAACTCACCTAGCTCGGACATTTCTTATCT TGCTCGTATAATGAGATATTTGGTCAGAAAAGAATTTTTTACTGCACACCCCCCATCAGATGGAGGAGAAACACTCTTTGGGCTGAATCAAAAATCAAGA ATGCTAATGCATGACTCTGAACGAAGCCTCGTTTCTATAATAATCATGCAACACAGTTCATGGTTCCTAGCAGCGTGGCATTGCTTGAGCCAATGTATCA AAGAAGGTGGAACCGCTTTCTCGAAGGCTCATGGCTGTGAACTGTGGGATTTTGCGTCTCGAAATCCTGAGGTCAATAGGATTTTCAATGAGGCCATGGC ATGCACATCAAATATCACGATGAGGGCAATTTTATCACATTACAAAGATGGTTTCAACAACATTAGATCATTGGTGGATGTTGCTGGTGGTATTGGAGGA CATGTAGCAGAGATTGTCAGGGCCTACCCACACATTGAAGGAATAAACTTCGATCTGCCACATGTTGTAGCAACAGCACCAAAATATGAAGGAGTTTCCC ATGTTGCAGGAAATATGTTTGAGGCTATTCCTAATGCTGATGCAATTTTCATACAGCGGATATTGCATGATTGGACCGATGAATCATGCGTTGAAATTTT GAGAAATTGCAAGAAAGCAATACCTGAAAAAACTGGAAAGCTTATCATAGTTGATATAGTTCTACCAACAGATGATCATTGTGATCAATTTGATGATATA AGAATGGTAATGGATTTAGTGATGTTTGCACTGACCACTGGTGGGAAGGAGAGAACTGAGCAAGAATGGAAGAAATTATTAGAGGAAGGAGGCTTCTCTC GCTATAAAATCATCAAGATCCCAGCTTTGGAATCTATTATCGAGGCTTATCCAGATCCAGAGTGA
AA sequence Show only first row Show all	>Potri.013G141301.1 pacid=42812545 polypeptide=Potri.013G141301.1.p locus=Potri.013G141301 ID=Potri.013G141301.1.v4.1 annot-version=v4.1 MASQEAEAFFKSQFEIFQLSLGFVDSMALKCAVELRLPEIINSHGRPISLSQIASGINSPSSDISYLARIMRYLVRKEFFTAHPPSDGGETLFGLNQKSR MLMHDSERSLVSIIIMQHSSWFLAAWHCLSQCIKEGGTAFSKAHGCELWDFASRNPEVNRIFNEAMACTSNITMRAILSHYKDGFNNIRSLVDVAGGIGG HVAEIVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCVEILRNCKKAIPEKTGKLIIVDIVLPTDDHCDQFDDI RMVMDLVMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYPDPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.013G141301 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Potri.013G143800 [exp]	1.00	1.0000
AT4G35160			O-methyltransferase family pro...		Potri.013G136300 [exp]	1.41	1.0000
AT1G47620		CYP96A8	"cytochrome P450, family 96, s...		Potri.005G094500 [exp]	3.46	0.9999	CYP96G1,Pt-CYP96.2
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.012G101900 [exp]	3.87	0.9999
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.012G102000 [exp]	5.29	0.9999
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212300 [exp]	6.32	0.9998
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176700 [exp]	7.34	0.9998	CHS.3
					Potri.013G143600 [exp]	8.36	0.9997
AT4G35160			O-methyltransferase family pro...		Potri.019G093100 [exp]	8.83	0.9997
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.006G108100 [exp]	9.79	0.9998	Pt-LTP1.1

Compare expression of checked genes

Potri.013G141301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.