Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00190 2015 / 0 ATCG00190.1, RPOB RNA polymerase subunit beta (.1) AT4G21710 151 / 7e-37 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 145 / 4e-35 NRPC2 nuclear RNA polymerase C2 (.1) AT3G23780 119 / 5e-27 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 117 / 2e-26 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 114 / 2e-25 NRPA2 nuclear RNA polymerase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 162 / 3e-40 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 146 / 3e-35 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 144 / 2e-34 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 107 / 3e-23 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.019G027860 [exp] 71 / 1e-14 ATCG00180 145 / 6e-42 DNA-directed RNA polymerase family protein (.1) Potri.006G263900 [exp] 47 / 4e-05 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017504 [exp] 159 / 3e-39 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10028778 [exp] 159 / 3e-39 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10011182 [exp] 141 / 1e-33 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10015446 [exp] 140 / 2e-33 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011322 [exp] 116 / 1e-26 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10039677 [exp] 116 / 7e-26 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10026157 [exp] 115 / 1e-25 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10027166 [exp] 58 / 5e-08 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0410 [poplar] [flax] LEF-8-like PF00562 [poplar] [flax] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 CL0410 [poplar] [flax] PF04560 [poplar] [flax] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7
Representative CDS sequence Show only first row Show all	>Potri.013G142232.2 pacid=42811475 polypeptide=Potri.013G142232.2.p locus=Potri.013G142232 ID=Potri.013G142232.2.v4.1 annot-version=v4.1 ATGGAGTTAGATAAAATTTTATGTGATTCTGTAAACAGAATAGCAATTCCATCAGTGCTGATCGATCCATATAATTGGATGAAAAACGATCCAATAATGG GATTTTTTTTTTCAATAAATGGGAAATTTAAAATGCTTGGGGATGGAAATGGGGGAATGTCTACAATACCTGGATTTAATCAGATACAATTTGAAGGATT TTGTAGATTCATTGATCAGGGCTTAGCAGAAGAACTTTATAAGTTTCCAAAAATTGAAGATAGAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACA TATCAATTAGTAGAACCATCGATAAAAGAAAGAGATGCTGTATATGAATCACTTACATATTCTTCTGAATTATATGTATCCGGGGGATTAATTTGGAAAA ACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGAATATACAGAATTGTGAT CAATCAAATATTGCAAAGTCCTGGTATCTATTACCGGTCAGAATTGAACCATAACGGAATTTCGGTCTATACCGGCACTATAATATCAGATTGGGGGGGA AGAGTAGAATTAGAGATTGATAAAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTTTAGTTCTATCATCAGCTATGGGTTTGA ATCTAAGAGAAATTCTAGAGAATGTGTGCTACCCCGAGATTTTCTTGTCTTTCCTGAGCGATAAGGAAAAAAAAAAAATTGGGTCAAGGGAAAATGCCAT TTTGGAGTTTTATCAACAATTTACTTGTGTAGGCGGAGGTCCAGTATTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTTTTTCAACAAAGATGT GAATTAGGAAGGATTGGTCGACTAAATATGAACCAGAGACTGAATCTTGATATACCTCATAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCCG CGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGATGACATGAATCATTTAAAAAATAAGCGTATTCGTTCTGTAGCGGATCTCTTACAAGA TCAATTCGGATTGGCTCTAATTCGTTTAGAAAATGTGGTTAGAGGAACTATATGTGGAGCAATTAGGCATAAATTGATACCGACCCCTCAAAATTTGGTA ACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTCGGATTACACCCCTTATCTCAAGTTTTGGATCGAACGAATCCATTGACACAAATAGTTCATG GGAGAAAATCGAGTTATTTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGTATACGAGATATCCATCCTAGTCACTATGGGCGCATTTGCCC AATTGACACGTCTGAGGGAATCAATGTCGGACTTATCGGATCCTTAACAATTCATGCCAAGATTGGCCATTTGGGGTCTTTAGAAAGCCCGTTTTATGAA ATCTCTGCGAGATCAAAAAAAGTACGGATGCTTTATTTATCACCAAATAGGGATGAATACTATATGATAGCGGCAGGAAATTGTTTGGCGCTGAATCGAG GTGCTCGGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAGGTGCGTCTTCGAAGTTTTTTCCCCTTCCAATA TTTTTCTATTGGAGCTTCTCTCATTCCTTTTATCGAGCATAATGATGCGAATCGGGCTTTAATGAGTTCGAATATGCAACGTCAAGCAGTTCCGCTTGCT CGTTCCGAGAAGTGCATTGTTGGAACTGGATTGGAACGCCAAGTGGCTCTTGATTCGGGGGTTCCTGCTATAGCCGAACACGAGGGAAAGATAATTTATA CCGACATTGACAAGATTATTTTATCGGGGAATGGCTATACTGTAAGCATTCCATTAGTTATGTATCAACGTTCCAACAAAAATACCTGTATGCATCAAAA AACTCAGGTTCAGCGAGGAAAATGCATTAAAAGGGGACAAGTTTTGGCGGACGGTGCCGCTACAGTTGGTGGCGAACTCGCCTTGGGCAAAAACATATTA GTAGCTTATATGCCATGGGAAGGCTACAATTTTGAAGATGCGGTACTCATTAGCGAACGTCTGGTATATGAAGATGTTTATACTTCTTTTCACATACGGA AATACGAAATTCAGACTCATGTGACAAGCCAAGGCCCCGAAAGGATCACTAACGAAATACCGCATCTAGAAGCCCATTTACTCCGAAATTTAGACAAAAA CGGAATTGTGATGCTGGGATCTTGGGTAGAGACAGGCGATATTTTAATAGGTAAATTAACGCCTCAATTGGCGAAAGAATCATCGTATGCCCCCGAAGAT AGATTATTACGAGCCATACTGGGCATTCAAGTATCTACTTCAAAGGAAACTTGTCTAAAACTACCTACAGGCGGTAGGGGTCGAGTTATTGATGTGAGAT GGATCCAGAAAAAAGGGGGTTCCAGTTATAATCCAGAAACAATTCGCGTATATATTTTACAGAAACGTGAAATCAAAGTAGGGGATAAAGTCGCTGGAAG ACATGGAAATAAAGGCATCATTTCCAAAATTTTGCCTAGACAAGATATGCCTTATTTGCAAGATGGAGCACCTGTTGATATGGTCTTCAACCCATTAGGA GTACCTTCACGAATGAATGTAGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAAGTCTGCTAGATAGACATTATCGAGTAGCACCTTTTGATGAGA GATATGAACAAGAGGCTTCGAGAAAACTAGTATTTTCTGAATTATATGAAGCCGGTAAGCAAACAGGAAATCCGTGGGTATTTGAACCCGAATGCCCGGG AAAAAGTAGAATATTTGATGGAAGAACGGGAGATCCTTTTGAGCAGCCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGCTGAT AAAATACATGGACGTTCCAGTGGGCATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAACAAGGGGGACAACGGGTAGGAGAAATGGAGG TTTGGGCTCTAGAGGGATTTGGTGTTTCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGCCAAGAAGTGCTTGGTACTAC GATCAGTGGACGAACAATACCTAAACCTGAGGATGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAACTACGATCTTTGGCTCTGGAACTGAAACATTTC CTTATATCTGAGAAGAACTTCCAGATTAATAGGAAGGAAGTTTAA
AA sequence Show only first row Show all	>Potri.013G142232.2 pacid=42811475 polypeptide=Potri.013G142232.2.p locus=Potri.013G142232 ID=Potri.013G142232.2.v4.1 annot-version=v4.1 MELDKILCDSVNRIAIPSVLIDPYNWMKNDPIMGFFFSINGKFKMLGDGNGGMSTIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDRDQEIEFQLFVET YQLVEPSIKERDAVYESLTYSSELYVSGGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYRSELNHNGISVYTGTIISDWGG RVELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILENVCYPEIFLSFLSDKEKKKIGSRENAILEFYQQFTCVGGGPVFSESLCKELQKKFFQQRC ELGRIGRLNMNQRLNLDIPHNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALIRLENVVRGTICGAIRHKLIPTPQNLV TSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLTIHAKIGHLGSLESPFYE ISARSKKVRMLYLSPNRDEYYMIAAGNCLALNRGAREEQVVPARYRQEFLTIAWEQVRLRSFFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLA RSEKCIVGTGLERQVALDSGVPAIAEHEGKIIYTDIDKIILSGNGYTVSIPLVMYQRSNKNTCMHQKTQVQRGKCIKRGQVLADGAATVGGELALGKNIL VAYMPWEGYNFEDAVLISERLVYEDVYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNLDKNGIVMLGSWVETGDILIGKLTPQLAKESSYAPED RLLRAILGIQVSTSKETCLKLPTGGRGRVIDVRWIQKKGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGAPVDMVFNPLG VPSRMNVGQIFECSLGLAGSLLDRHYRVAPFDERYEQEASRKLVFSELYEAGKQTGNPWVFEPECPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVAD KIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVSHILQEMLTYKSDHIRARQEVLGTTISGRTIPKPEDAPESFRLLVRELRSLALELKHF LISEKNFQINRKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00190		ATCG00190.1, RP...	RNA polymerase subunit beta (....		Potri.013G142232 [exp]	0	1
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140850 [exp]	1.00	0.9941
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027720 [exp]	3.87	0.9862
					Potri.013G142972 [exp]	5.74	0.9782
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140260 [exp]	6.92	0.9839
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027860 [exp]	7.34	0.9810
ATCG00360		ATCG00360.1, YC...	Tetratricopeptide repeat (TPR)...		Potri.013G141700 [exp]	8.66	0.9734
					Potri.011G074501 [exp]	9.79	0.9782
ATMG00580		ATMG00580.1, NA...	NADH dehydrogenase subunit 4 (...		Potri.007G061921 [exp]	9.94	0.9584
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.003G067332 [exp]	10.19	0.9782
ATCG00150		ATCG00150.1, AT...	ATPase, F0 complex, subunit A ...		Potri.019G028601 [exp]	14.86	0.9731

Compare expression of checked genes

Potri.013G142232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.