Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00330 164 / 2e-54 ATCG00330.1, RPS14 chloroplast ribosomal protein S14 (.1) AT2G34520 42 / 6e-06 RPS14 mitochondrial ribosomal protein S14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G424950 [exp] 53 / 3e-10 AT2G34520 134 / 1e-41 mitochondrial ribosomal protein S14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034657 [exp] 47 / 9e-08 AT2G34520 129 / 1e-39 mitochondrial ribosomal protein S14 (.1) Lus10017877 [exp] 46 / 1e-07 AT2G34520 131 / 2e-40 mitochondrial ribosomal protein S14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00253 [poplar] [flax] Ribosomal_S14 Ribosomal protein S14p/S29e
Representative CDS sequence Show only first row Show all	>Potri.013G142336.1 pacid=42812121 polypeptide=Potri.013G142336.1.p locus=Potri.013G142336 ID=Potri.013G142336.1.v4.1 annot-version=v4.1 ATGGCAAGGAAAAGTTTGATTCAGCGGGAGAAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCGATCCTCAAAAAAAGAAATAAGCAAAG TTCCGTCGTTGAGTGATAAATGGGAAATTCATGGAAAGTTACAATCCCCACCGCGAAATAGTGCACCAACACGTCTTCACCGACGTTGTTTTTTGACTGG AAGACCAAGAGCTAATTATCGAGACTTTGGGCTATCCGGACACATACTTCGTGCAAAGGTTCATGCATGTTTGTTGCCGGGGGCAACAAGATCAAGTTGG TAA
AA sequence Show only first row Show all	>Potri.013G142336.1 pacid=42812121 polypeptide=Potri.013G142336.1.p locus=Potri.013G142336 ID=Potri.013G142336.1.v4.1 annot-version=v4.1 MARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSDKWEIHGKLQSPPRNSAPTRLHRRCFLTGRPRANYRDFGLSGHILRAKVHACLLPGATRSSW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00330		ATCG00330.1, RP...	chloroplast ribosomal protein ...		Potri.013G142336 [exp]	0	1
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Potri.011G113575 [exp]	5.47	0.8915
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Potri.013G162700 [exp]	7.34	0.8580
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Potri.011G074868 [exp]	8.36	0.8852
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.013G142201 [exp]	8.48	0.8757
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074700 [exp]	9.89	0.8728
ATCG01060		ATCG01060.1, PS...	iron-sulfur cluster binding;el...		Potri.019G014344 [exp]	13.41	0.8485
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Potri.005G154836 [exp]	14.69	0.8209
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	15.16	0.8566
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.011G113800 [exp]	18.33	0.8439
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	20.78	0.8401

Compare expression of checked genes

Potri.013G142336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.