Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23690 192 / 1e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 169 / 8e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 169 / 2e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 141 / 1e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 79 / 2e-18 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 72 / 1e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 71 / 1e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 71 / 2e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 71 / 2e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097001 [exp] 346 / 2e-123 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142602 [exp] 263 / 5e-91 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 263 / 5e-91 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134400 [exp] 263 / 6e-91 AT1G64160 184 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 257 / 2e-88 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 256 / 3e-88 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134600 [exp] 252 / 2e-86 AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 239 / 3e-81 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096440 [exp] 183 / 1e-59 AT1G64160 119 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017538 [exp] 303 / 4e-106 AT4G23690 187 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024715 [exp] 249 / 5e-85 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032331 [exp] 246 / 5e-84 AT4G23690 187 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024714 [exp] 245 / 1e-83 AT4G23690 186 / 3e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017539 [exp] 171 / 4e-54 AT1G64160 238 / 9e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028749 [exp] 170 / 8e-54 AT1G64160 232 / 2e-78 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 85 / 1e-20 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 83 / 4e-20 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028750 [exp] 81 / 4e-20 AT4G23690 52 / 3e-09 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 82 / 6e-19 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [poplar] [flax] AOC_barrel PF03018 [poplar] [flax] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G142702.1 pacid=42811826 polypeptide=Potri.013G142702.1.p locus=Potri.013G142702 ID=Potri.013G142702.1.v4.1 annot-version=v4.1 ATGGAAGCTAAAAGACTAATTTTAGCTCTCTTCCTTCTCTTCTTGCTCTCTAAATCCTCTGCTTTCCCTAGCAGAAAATCTCGAGTTCATAAACCATGCA AAAGATTAGTCTTCTATTTCCATGACATTATTTACAATGGCAAGAACTCCAAGAACGCAACCGCGGCAATTGTGGGGGCACCAGCTTGGGGCAACAAGAC CATATTGGCTAACCAAAACCATTTTGGTGACTTGGTTGTTTTTGATGACCCCATTACCTTAGACAACAACCTACACTCGGCCCCAGTAGGTCGTGCCCAA GGGATTTATGTGTATGACAAGAAAGAAATCTTCACTGCCTGGCTAGGTTTCTCTTTCGTTTTTAACTCTACTGAGCATAAAGGAAGCATAAACTTTGCCG GGGCTGATCCATTGATGAACAAGACTAGGGATGTTTCAGTGATTGGTGGTACTGGAGACTTCATCATGGCTCGAGGAATAGCCACATTGATGACTGATGC ATTCGAGGGTGAAGTTTATTTCAGGCTTCGTGTTGATATTCAGTTGTACGAGTGCTGGTGA
AA sequence Show only first row Show all	>Potri.013G142702.1 pacid=42811826 polypeptide=Potri.013G142702.1.p locus=Potri.013G142702 ID=Potri.013G142702.1.v4.1 annot-version=v4.1 MEAKRLILALFLLFLLSKSSAFPSRKSRVHKPCKRLVFYFHDIIYNGKNSKNATAAIVGAPAWGNKTILANQNHFGDLVVFDDPITLDNNLHSAPVGRAQ GIYVYDKKEIFTAWLGFSFVFNSTEHKGSINFAGADPLMNKTRDVSVIGGTGDFIMARGIATLMTDAFEGEVYFRLRVDIQLYECW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23690			Disease resistance-responsive ...		Potri.013G142702 [exp]	0	1
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	4.89	0.9432	PtrSuSY1,Pt-SUS1.2
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	5.47	0.9333
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	6.00	0.9538	UXS1.1
AT5G11640			Thioredoxin superfamily protei...		Potri.006G237600 [exp]	6.48	0.9456
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	7.74	0.9392
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	11.53	0.9374	LAC110c
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	15.42	0.9311
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.003G146200 [exp]	15.87	0.9391
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.017G092000 [exp]	17.54	0.9123
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	17.66	0.9154

Compare expression of checked genes

Potri.013G142702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.