Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00280 853 / 0 ATCG00280.1, PSBC photosystem II reaction center protein C (.1) ATCG00270 59 / 4e-09 ATCG00270.1, PSBD photosystem II reaction center protein D (.1) ATCG00680 54 / 2e-07 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208700 [exp] 333 / 2e-113 ATCG00280 328 / 4e-112 photosystem II reaction center protein C (.1) Potri.010G032700 [exp] 188 / 5e-58 ATCG00280 164 / 1e-49 photosystem II reaction center protein C (.1) Potri.019G047480 [exp] 160 / 2e-47 ATCG00280 140 / 2e-40 photosystem II reaction center protein C (.1) Potri.008G207200 [exp] 59 / 2e-09 ATCG00270 434 / 1e-154 photosystem II reaction center protein D (.1) Potri.011G074868 [exp] 55 / 7e-08 ATCG00680 926 / 0.0 photosystem II reaction center protein B (.1) Potri.011G113575 [exp] 54 / 2e-07 ATCG00680 933 / 0.0 photosystem II reaction center protein B (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00421 [poplar] [flax] PSII Photosystem II protein
Representative CDS sequence Show only first row Show all	>Potri.013G142760.1 pacid=42811983 polypeptide=Potri.013G142760.1.p locus=Potri.013G142760 ID=Potri.013G142760.1.v4.1 annot-version=v4.1 ATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAA CTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACAGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTGCTGGGAGCTCA TGTAGCCCATGCTGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCGGAGAAGCCAATGTATGAACAAGGATTA ATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTGGGTCCTGGCGGGGAAGTCATAGACACCTTTCCATACTTTGTATCTGGCGTACTTCACTTAA TTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACTTCTAGGACCCGAGACTCTTGAAGAATCTTTTCCATTTTTTGGTTATGTATGGAAAGA TAGAAATAAAATGACAACAATTTTAGGTATTCACTTAATCTTGCTAGGTATAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATAT GATACCTGGGCTCCGGGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATTTTTGGTTATTTACTAAAATCTCCTTTTGGAG GAGAAGGATGGATTGTTAGTGTGGATGATTTGGAAGATATAATTGGGGGGCATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTT AACCAAACCCTTTGCATGGGCTCGCCGTGCACTTGTATGGTCCGGGGAGGCTTATTTGTCTTATAGTTTAGGCGCTTTAGCTGTTTTTGGTTTCATTGCT TGTTGCTTTGTCTGGTTCAATAATACCGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCTTTTACTTTTCTAGTTA GAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACCGGCTTAGGTAAATATCTAATGCGTTCGCCCACCGGAGAAGTTATTTTTGGAGG AGAAACTATGCGTTTTTGGGATCTGCGCGCTCCTTGGTTAGAACCTCTAAGAGGTCCAAATGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCT TGGCAAGAACGACGTTCTGCGGAATATATGACCCATGCGCCTTTAGGTTCATTAAATTCCGTAGGTGGCGTAGCTACCGAGATCAATGCAGTCAACTATG TCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTCGGGTTCTTCCTATTCGTAGGTCATTTATGGCACGCGGGAAGGGCTCGTGCAGCTGCAGC AGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAG
AA sequence Show only first row Show all	>Potri.013G142760.1 pacid=42811983 polypeptide=Potri.013G142760.1.p locus=Potri.013G142760 ID=Potri.013G142760.1.v4.1 annot-version=v4.1 MKAFVLGWRLKISLMKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGL ILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIA CCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQP WQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.013G142760 [exp]	0	1
ATCG00630		ATCG00630.1, PS...	PSAJ (.1)		Potri.003G067501 [exp]	4.47	0.9206
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	5.47	0.9401
ATCG01060		ATCG01060.1, PS...	iron-sulfur cluster binding;el...		Potri.019G014344 [exp]	6.32	0.9251
ATCG00430		ATCG00430.1, PS...	photosystem II reaction center...		Potri.013G163100 [exp]	8.48	0.9180
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074700 [exp]	9.38	0.9183
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.007G062202 [exp]	13.96	0.9004
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.013G142201 [exp]	14.45	0.8806
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.008G207200 [exp]	15.29	0.9037
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074750 [exp]	22.44	0.9028
ATCG00710		ATCG00710.1, PS...	photosystem II reaction center...		Potri.011G113742 [exp]	23.32	0.8960

Compare expression of checked genes

Potri.013G142760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.