Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 414 / 4e-146 Protein of unknown function (DUF789) (.1) AT1G03610 409 / 3e-144 Protein of unknown function (DUF789) (.1) AT4G28150 329 / 3e-113 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 269 / 4e-89 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 258 / 1e-84 Protein of unknown function (DUF789) (.1) AT2G01260 219 / 8e-69 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 215 / 2e-67 Protein of unknown function (DUF789) (.1) AT4G16100 209 / 5e-65 Protein of unknown function (DUF789) (.1) AT5G49220 191 / 1e-57 Protein of unknown function (DUF789) (.1) AT5G23380 150 / 4e-43 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103000 [exp] 531 / 0 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 299 / 2e-100 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 294 / 7e-99 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 225 / 8e-71 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 218 / 3e-68 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 215 / 4e-67 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 211 / 1e-65 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 101 / 2e-23 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 93 / 1e-20 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018572 [exp] 435 / 4e-154 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 406 / 8e-143 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 404 / 1e-142 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 303 / 3e-103 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 281 / 2e-93 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 251 / 3e-81 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10016841 [exp] 209 / 2e-64 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 206 / 2e-63 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 193 / 4e-56 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 162 / 6e-47 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [poplar] [flax] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Potri.013G144000.1 pacid=42810908 polypeptide=Potri.013G144000.1.p locus=Potri.013G144000 ID=Potri.013G144000.1.v4.1 annot-version=v4.1 ATGTTTCTTGAAAAAGGGTCAATGCAATCAAACCTTGATTGCTTCCTTCATTGCACAACCCCACGAGTCCAATCTCAATTCCTCGCGAAGAGTGAGACTA GAAATCTAAACAGATTATGGCACCCATGGGAGAGAGACACAGTGGAGTATTTTACTTTGGGTGATCTATGGAATTTTTATGATGAATGGAGTGCTTATGG GGCTGGAATTCCTATTGTTTTGAACAATGATGAAACTTTGGTTCAGTACTATGTGCCTTATCTTTCTGCAATCCAAATTTTCACAAGCAATTCTTCAGTC AACAGTTTCAGGGAAGACACCGAGTCCGGTGATGGCGAAACGAGGGACTCCTTTAGCGATTCGTGGAGTAATGAGAGTGTGACTGACAAGGTATGTAGGT CGGATGGATGCTCATCAGAGGAAGGAGGGTCAGAGCAAGACAATCCTTGGCCTATAAATGATAGATTGGGGCGACTATATTTTGAGTACTTTGAGAGATC AACTCCTTATGGAAGAGTTCCTTTGATGGATAAGATTAATGGATTTGCTCGACGATTTCCGGGTTTAATGTCATTGAGAAGTGTAGATCTTTCACCAGCT AGTTGGATGGCTGTTGCTTGGTATCCAATCTATCACATTCCAATGGGAAGAACCATAAAGGACTTGTCCACATGTTTCTTGACCTACCACACCCTCTCAT CATCTTTTCAAGATATGGATGTAGAAGATGACATTGGGAGCCCAGAAAAGAAGCGAAAGGAAGGGGAAATCATCACTCTCCCTCCATTTGGTTTGGCCAC TTACAAGATGCAAGGGAAGTTGTGGGTCTCAGGCAATGGCGGTAGGGACCAAGAGAGGCTAGTCTCACTTTTAAGTGTGGCAGATTCATGGCTAAAGCAA CTAACGGTCCAGCACCATGACTTCGATTACTTCACGGGGATTAAGGGTGGCTAA
AA sequence Show only first row Show all	>Potri.013G144000.1 pacid=42810908 polypeptide=Potri.013G144000.1.p locus=Potri.013G144000 ID=Potri.013G144000.1.v4.1 annot-version=v4.1 MFLEKGSMQSNLDCFLHCTTPRVQSQFLAKSETRNLNRLWHPWERDTVEYFTLGDLWNFYDEWSAYGAGIPIVLNNDETLVQYYVPYLSAIQIFTSNSSV NSFREDTESGDGETRDSFSDSWSNESVTDKVCRSDGCSSEEGGSEQDNPWPINDRLGRLYFEYFERSTPYGRVPLMDKINGFARRFPGLMSLRSVDLSPA SWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDVEDDIGSPEKKRKEGEIITLPPFGLATYKMQGKLWVSGNGGRDQERLVSLLSVADSWLKQ LTVQHHDFDYFTGIKGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03420			Protein of unknown function (D...		Potri.013G144000 [exp]	0	1
					Potri.002G166850 [exp]	2.00	0.8341
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.006G198600 [exp]	2.44	0.8084
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	3.74	0.8241
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.009G007800 [exp]	7.74	0.7915	Pt-PNATH.1
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Potri.006G164632 [exp]	14.96	0.7757
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	17.49	0.7548
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.010G027201 [exp]	17.74	0.7970
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	18.81	0.8026
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	19.87	0.8064
AT4G18593			dual specificity protein phosp...		Potri.006G040300 [exp]	24.33	0.7507

Compare expression of checked genes

Potri.013G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.