Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	10,Pt-DFL2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03400 852 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G46370 565 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT4G37390 369 / 3e-120 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT1G28130 367 / 2e-119 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT4G27260 366 / 4e-119 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT1G23160 357 / 3e-116 Auxin-responsive GH3 family protein (.1) AT5G54510 355 / 8e-115 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT1G48660 353 / 1e-114 Auxin-responsive GH3 family protein (.1) AT2G23170 351 / 2e-113 GH3.3 Auxin-responsive GH3 family protein (.1) AT2G47750 347 / 3e-112 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103500 [exp] 1080 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.002G168200 [exp] 579 / 0 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.014G095500 [exp] 573 / 0 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.013G151100 [exp] 368 / 7e-120 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 363 / 5e-118 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 361 / 3e-117 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 360 / 1e-116 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 359 / 1e-116 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 347 / 8e-112 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039797 [exp] 803 / 0 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 591 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 587 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10018565 [exp] 539 / 0 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 379 / 4e-124 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 371 / 5e-121 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 369 / 5e-120 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 362 / 2e-117 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 345 / 4e-111 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 345 / 5e-111 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.013G144300.1 pacid=42810799 polypeptide=Potri.013G144300.1.p locus=Potri.013G144300 ID=Potri.013G144300.1.v4.1 annot-version=v4.1 ATGGAACCAAAAAACACCAATGGATCGTCAAGAAGCTATGAACATGACATTATCAGTTGGTTTGAGGACATATCAAAGAAAGCCGGCCAAGTTCAGACCG AGACTCTTCGCCGAATTCTTGAGCTCAACTGGGGTGTGGAGTATCTCAACAAATGGTTAGGGGATATCAATATTCAAGACATGGATGCAAGTGCATTGGA ATCTCTGTACACTTCTTTGGTACCTCCTGCTTCCCATGCAGATTTAGAGCCTTACATTAGCAGAATTGCTGATGGGGATACTGTTCCGTTACTCACTAAA CAACCTATAACACTTCTCTCCTTAAGCTCTGGAACCACAGACGGAAGGCAGAAGTTTGTTCCTTTCACTGACCATAGTGCTCGAACAACTCTTCAAATTT TCAGCTTGGCAGCAGCTTATAGATCAAGGGTTTATCCAACAAGGGAAGGAGGAAGGATCCTTGAGTTCATATACAGCAGCAAACAATTCAAAACAAAAGG AGGGTTAACAGCAGGAACAGCTACAACCCATTATTATGCAAGTGAAGAGTTTAAGATCAAGCAAGAAAAAACAAAGTGCTTCACTTGTAGTCCACAAGAA GTCATTTCTGGTGGAGACTACGAGCAATCTACTTATTGTCATCTTCTTCTAGGCCTCTTCTTCTGTGATCAAGTAGAGTTCATAACCTCTACTTTTGCTT ATAGCATAGTTCAAGCCTTCACAGCATTTGAAGATGTGTGGAGAGACATATGCAATGACATTAAACATGGTACTCTTAGTGAAAGAATCAACTTGGCAAA GATGAGAAAGGCTGTGCTGTCTATCATCTCTCCAAATCCAAGCTTAGCTTCAAAGATAGAAGAAAACTGCAAGGAGTTGGAGACTCAAAATTGGCTTGGT TTGATTACTAAGCTTTGGCCAAATTCCAAGTATGTTTACTCCATAATGACAGGCTCAATGCAACCTTACTTGCAAAAACTAAGGCATTATGCTGGGGGCT TGCCATTAGTGAGTGCTGATTATGGATCAACAGAGAGTTGGATTGGAGCTAATGTGGATCCTTATTTGCCTCCTGAAGATGTTACTTTTGCAGTAATACC AACCTTCTCATATTATGAGTTCATGCCACTTTATAGAGAGAATCATTATTGTGGCTCAGCCATCGATGACTTCATCGAAGATGAACCGGTACCACTCTCA AAAGTCAAGGTAGGACAAGAGTATGAGATTGTCCTCACTACTTTTACTGGGCTTTATAGATGCAGGCTAGGGGATGTAGTGGAGGTTGCTGGTTTTCACA AAGGGACACCAAAATTGAACTTTATATGCCGGAGAAAGCTAATTTTAACTATAAACATTGACAAGAACACTGAAAAAGATTTGCAGCTGGTGGTGGAGAA GGGGTCTCAGCTACTCATGAGCAAGGCTAGAGCAGAGCTTGTGGATTTTACTAGCCACGCTGAGTTAGAAACACAGCCAGGTCACTACATAATTTACTGG GAAATCAAAGGAGATGTCGAAGAAGAGGTTCTTGGTGAGTGTTGCAAGAAAATGGATGCATCTTTTGTTGATCATGGCTATGTGGTGTCAAGAAGAACCA AATCAATAGGACCTCTAGAGCTTTGCATTGTCAAGACGGGGACTTTCAAGAAGATCTTGGAATATTTCATAGGAAATGGGGCAGCATTGAGCCAGTTCAA GACTCCTAGGTGCACCAGCAACCATGGACTGTTGAAAATTCTCAATGGAAGCACCATTAAAAGGCTCTACAGCACTGCTTATAGCTAG
AA sequence Show only first row Show all	>Potri.013G144300.1 pacid=42810799 polypeptide=Potri.013G144300.1.p locus=Potri.013G144300 ID=Potri.013G144300.1.v4.1 annot-version=v4.1 MEPKNTNGSSRSYEHDIISWFEDISKKAGQVQTETLRRILELNWGVEYLNKWLGDINIQDMDASALESLYTSLVPPASHADLEPYISRIADGDTVPLLTK QPITLLSLSSGTTDGRQKFVPFTDHSARTTLQIFSLAAAYRSRVYPTREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKCFTCSPQE VISGGDYEQSTYCHLLLGLFFCDQVEFITSTFAYSIVQAFTAFEDVWRDICNDIKHGTLSERINLAKMRKAVLSIISPNPSLASKIEENCKELETQNWLG LITKLWPNSKYVYSIMTGSMQPYLQKLRHYAGGLPLVSADYGSTESWIGANVDPYLPPEDVTFAVIPTFSYYEFMPLYRENHYCGSAIDDFIEDEPVPLS KVKVGQEYEIVLTTFTGLYRCRLGDVVEVAGFHKGTPKLNFICRRKLILTINIDKNTEKDLQLVVEKGSQLLMSKARAELVDFTSHAELETQPGHYIIYW EIKGDVEEEVLGECCKKMDASFVDHGYVVSRRTKSIGPLELCIVKTGTFKKILEYFIGNGAALSQFKTPRCTSNHGLLKILNGSTIKRLYSTAYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	0	1	10,Pt-DFL2.2
AT4G22980			unknown protein		Potri.001G111600 [exp]	1.00	0.9379
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013700 [exp]	4.58	0.9167
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.012G012600 [exp]	5.29	0.9220
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.001G314400 [exp]	7.48	0.9213
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	7.93	0.9217
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	9.74	0.9195
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	10.67	0.9179
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G099900 [exp]	13.67	0.8928	DREB56
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	14.07	0.9114
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049401 [exp]	14.49	0.8708

Compare expression of checked genes

Potri.013G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.