Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 783 / 0 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 461 / 2e-151 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 352 / 5e-112 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G11130 337 / 5e-104 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G53730 302 / 2e-91 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 296 / 9e-90 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 280 / 1e-83 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 252 / 3e-73 SRF4 STRUBBELIG-receptor family 4 (.1) AT3G58690 219 / 7e-64 Protein kinase superfamily protein (.1) AT2G30740 217 / 1e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103900 [exp] 1108 / 0 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 637 / 0 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 392 / 2e-125 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 354 / 4e-111 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 352 / 2e-110 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 320 / 3e-98 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 312 / 3e-95 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 295 / 7e-89 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 289 / 7e-87 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031628 [exp] 847 / 0 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 814 / 0 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 803 / 0 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 468 / 4e-155 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 356 / 3e-112 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 353 / 3e-111 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 352 / 3e-108 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 328 / 1e-101 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 312 / 3e-95 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 310 / 6e-95 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G144600.1 pacid=42812212 polypeptide=Potri.013G144600.1.p locus=Potri.013G144600 ID=Potri.013G144600.1.v4.1 annot-version=v4.1 ATGGGAGTCAAGAGATCTGGTAAAAGAGTGTGCTTGAATTTGGAGATCTATGGAAAGTTCTTTATTGGGTTTGTTTTGATTTGCACAGCAAGGATTTCTG TTGGTGTTACTAATCCAAGTGATGTTACTGCAATTAATAGCTTATACATTTCACTGGGCTCTCCTGTACTGCCCGGGTGGGTCGGCACCGGGGGAGATCC ATGCGGCGAAGGGTGGCAAGGCATTGTATGTAATGTTTCAGAAATTCAATCCATAGTTCTTAATGGTGCGAATTTGGGAGGAGAACTTGGTGATAATCTG GGAATGTTTGCTTCTATCATATCGATAGGTCTGAGCAACAACCACATAGGGGGGAGTATTCCATCGAATCTGCCTGTTACTATGCAAAACCTTTTCCTTT CAGACAATAACTTCACTGGAAGCATCCCTGATTCCCTGTCCACTTTAACCTTACTGAAAGCCATGTCTCTTAACGATAATTTTTTAAGTGGAGAGATACC AGATGCCTTTCAAGCTCTTCCTGGGTTGATCAACTTAGACTTGTCCAATAACAATTTGAGTGGGCAGTTGCCTTCTTCTTTCATAGATTTGGCTAGTCTT ACAACCCTACGTTTGCAGGACAATCAACTATCTGGGACCCTTGATGTTCTACAAGATCTTCCCCTGAGAGATTTGAATGTAGAGAATAACCTGTTCTCAG GACCCATACCTGACAAGCTGCTGGCTATCCCAAATTTCAGAAATGATGGCAATCCGTTCAATACTTCCTCTGCTCCATTACCTGCACCCACATCCCCATC ACCATATACACCACCACTTTCTGGGGCTCCACCATCACCGTCTTCTCGGAGAACACCCGGGAAGCAGGCTGATGCGCCGTCTTCATCAGAGAAATCGAGT TCTGGAGGAAAAAATAAAAGAGTAGTTTGGATATCCATTGCAGGTGTATTGTTGTTTGTAATACTGGCATTAGCACTTGTGCTTTTGATTCCAAGATGTA GCAGAAGAAGGTGGGAGGATAGCAGAATTTTCAAGCGGCATCAAGTTGGAGAGAACCCAAGGGACAATGGATCCTTGGTCCGACCAACTAATCAAAATGA AAAAGTTCCAAAGGAGACCACACAGAAGCCCAAAGAGGACCATCCAAAGCCACAAAATATGCATATGAGAAATGAACCCAAAATGAACCCAGCACCAAAT AGGGACAATCACTTAATGGCCATTGGCAGAGCAGATCTAGATTTCATGGCTCCTCCTCTTCCTCCACCTCCACCTCCACCTCCACCTCCACCCCCACCAC CTCCTCCTCCTCCACCCCCTGTTGAGAATGTCATTGTTAAGCCAATTGTGCCTGCTGAAGTAAGCTCAGGGAAGCCTTCTCGTAAAACTCAGATCCCTCT CACTTCTGCTAGGTCCTTCAATATTGCATCACTTCAGCAATACACAAGCAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTGGGAAGTGTTTAT AGGGCACAGCTTCCTAATGGAAAGCTTCTTGCTGTCAAGAAACTCGATAAGAGGACTGCAGAGCAGCAGAAGGACGTGGAGTTTATTGAATTGGTTAACA ATATTGATCGGATCCGACATGCTAATGTTGTTGAGCTCATGGGATACTGTGCAGAGCATGGTCAGAGGCTTCTGATCTATGAGTATTGCAGTAATGGCTC TTTGCAAGATGCACTACACTCAGACGATGAATTTAAAAAGAAACTTTCCTGGAATGCCCGCATTAAGATGGCACTTGAAGCTGCTAGAGCCTTAGAGTAT TTGCATGAGGTCTGTCAGCCACCTGTTATACACAGAAATTTTAAGTCTGCCAATGTTCTTCTTGATGATGATCTTGATGTTCGTGTCTCGGATTGTGGTT TGGCTTCATTAATATCATCAGGGTCTGTAAGTCAGTTGTCAGGCCAGCTGCTAACAGCTTATGGTTATGGGGCTCCAGAATTTGAATCAGGTATCTATAC CATCCAGAGTGATGTTTACAGCTTTGGTGTGGTCATGCTGGAACTCTTAACTGGCCGGAAGTCTTATGACAGGACACGGACTCGGGGGGAGCATTTTATA GTGAGATGGGCAATCCCCCAGCTCCATGACATTGACACATTGTCAAAGATGGTTGATCCCGCCCTTAATGGAGAATACTCTGCTAAATCTTTATCAAACT TCGCCGATATCATTTCTCGATGTGTTCAGTCTGAACCAGAATTCAGGCCACAAATGTCTGAGGTTGTCCAGGATCTAACAGACATGATAAGGAGAGACCG CCCCAGCAATGAATCAATCGGCGACTGA
AA sequence Show only first row Show all	>Potri.013G144600.1 pacid=42812212 polypeptide=Potri.013G144600.1.p locus=Potri.013G144600 ID=Potri.013G144600.1.v4.1 annot-version=v4.1 MGVKRSGKRVCLNLEIYGKFFIGFVLICTARISVGVTNPSDVTAINSLYISLGSPVLPGWVGTGGDPCGEGWQGIVCNVSEIQSIVLNGANLGGELGDNL GMFASIISIGLSNNHIGGSIPSNLPVTMQNLFLSDNNFTGSIPDSLSTLTLLKAMSLNDNFLSGEIPDAFQALPGLINLDLSNNNLSGQLPSSFIDLASL TTLRLQDNQLSGTLDVLQDLPLRDLNVENNLFSGPIPDKLLAIPNFRNDGNPFNTSSAPLPAPTSPSPYTPPLSGAPPSPSSRRTPGKQADAPSSSEKSS SGGKNKRVVWISIAGVLLFVILALALVLLIPRCSRRRWEDSRIFKRHQVGENPRDNGSLVRPTNQNEKVPKETTQKPKEDHPKPQNMHMRNEPKMNPAPN RDNHLMAIGRADLDFMAPPLPPPPPPPPPPPPPPPPPPPPVENVIVKPIVPAEVSSGKPSRKTQIPLTSARSFNIASLQQYTSSFSQENLIGGGMLGSVY RAQLPNGKLLAVKKLDKRTAEQQKDVEFIELVNNIDRIRHANVVELMGYCAEHGQRLLIYEYCSNGSLQDALHSDDEFKKKLSWNARIKMALEAARALEY LHEVCQPPVIHRNFKSANVLLDDDLDVRVSDCGLASLISSGSVSQLSGQLLTAYGYGAPEFESGIYTIQSDVYSFGVVMLELLTGRKSYDRTRTRGEHFI VRWAIPQLHDIDTLSKMVDPALNGEYSAKSLSNFADIISRCVQSEPEFRPQMSEVVQDLTDMIRRDRPSNESIGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.013G144600 [exp]	0	1
					Potri.002G148550 [exp]	1.41	0.7115
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	10.29	0.7047
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	13.74	0.6645
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	14.83	0.6366
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	20.63	0.6802	WAVE4.1
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	24.24	0.6925
					Potri.017G046400 [exp]	30.00	0.6885
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	36.41	0.6178
AT5G43710			Glycosyl hydrolase family 47 p...		Potri.008G160900 [exp]	42.66	0.6221
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	42.98	0.6340

Compare expression of checked genes

Potri.013G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.