Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20840 439 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G61250 378 / 2e-132 SC3 secretory carrier 3 (.1.2) AT1G03550 377 / 3e-132 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G11180 361 / 5e-126 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT1G32050 278 / 1e-93 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104000 [exp] 511 / 0 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.011G045100 [exp] 391 / 1e-137 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 372 / 7e-130 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.001G134100 [exp] 315 / 3e-108 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 310 / 2e-106 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 144 / 4e-42 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018562 [exp] 425 / 8e-151 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10033712 [exp] 421 / 2e-149 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10039794 [exp] 420 / 9e-149 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10031627 [exp] 410 / 8e-145 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018455 [exp] 370 / 1e-129 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10038302 [exp] 369 / 4e-129 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10011229 [exp] 360 / 2e-125 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [poplar] [flax] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Potri.013G144700.1 pacid=42812227 polypeptide=Potri.013G144700.1.p locus=Potri.013G144700 ID=Potri.013G144700.1.v4.1 annot-version=v4.1 ATGAGTCGGTACGATTCGAATCCTTTCGATGAAGAAGAGGTCAATCCTTTCGCGGATCAAGGAGGAAAGGGGAAAGGATCAGGGCAATCAAATTATGGCG GAGGCGCGTTTTATATGCCTAATCCTGGAAGTGTCCCCCCTGCAACTTCAAGGCTTTCACCCCTTCCTCATGAACCCTATGATCGTGGTGCAACCATAGA TATTCCTCTTGATTCTGGAAAAGATATAAAAGCCAAGGAGAAGGAACTCCAAGCTAAAGAGGCTGAATTGAAGAGGAGGGAACAGGAACTAAAACGGAAG GAAGATGCGATAGCACGGGCTGGAATTGTAATAGAGGATAAGAACTGGCCACCATTTTTTCCGATTATCCATCATGACATTGGAAATGAAATACCAATCC ACCTGCAGAAGATGCAGTATGTTGCATTTACAACATTGTTGGGTTTATTTGTCTGTCTTTCTTGGAATATTATAGCTGTTACCACAGCCTGGATCAAAGG AGAAGGTCCAACGATATGGTTTCTTGCCATCATCTACTTCATAGCAGGGGTCCCTGGAGGCTATGTTATGTGGTATCGCCCCCTTTATCGTGCGATGAGG ACAGATAGTGCTCTGAAGTTTGGATGGTTTTTCTTTGCTTACCTGTTTCACATTGGCTTTTGCATCTTTGCTGCTGTTGCTCCCCCAATTGTTTTCAAGG GGAAATCTCTTGCAGGTATTTTGCCTGCTATTGATCTTATGGGCAACCACGCTTTAGTTGGGATATTCTACTTCATTGGATTTGGATTCTTCTGTGTGGA ATCCCTCCTCAGTATCTGGGTCATTCAGCAAGTCTACATGTATTTCCGAGGCAGTGGGAAAGCAGCAGAGATGAAGCGAGAGGCTGCAACAAGGACCATG ATGGCTGCCCTATGA
AA sequence Show only first row Show all	>Potri.013G144700.1 pacid=42812227 polypeptide=Potri.013G144700.1.p locus=Potri.013G144700 ID=Potri.013G144700.1.v4.1 annot-version=v4.1 MSRYDSNPFDEEEVNPFADQGGKGKGSGQSNYGGGAFYMPNPGSVPPATSRLSPLPHEPYDRGATIDIPLDSGKDIKAKEKELQAKEAELKRREQELKRK EDAIARAGIVIEDKNWPPFFPIIHHDIGNEIPIHLQKMQYVAFTTLLGLFVCLSWNIIAVTTAWIKGEGPTIWFLAIIYFIAGVPGGYVMWYRPLYRAMR TDSALKFGWFFFAYLFHIGFCIFAAVAPPIVFKGKSLAGILPAIDLMGNHALVGIFYFIGFGFFCVESLLSIWVIQQVYMYFRGSGKAAEMKREAATRTM MAAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	0	1
AT5G21070			unknown protein		Potri.009G158800 [exp]	1.73	0.9429
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	2.64	0.9500
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	3.00	0.9289
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	3.87	0.9410
AT5G21070			unknown protein		Potri.004G196600 [exp]	4.69	0.9492
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	5.29	0.9413
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	5.47	0.9279
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	5.83	0.9179
AT5G54780			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G419100 [exp]	6.00	0.9177
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	8.66	0.9197

Compare expression of checked genes

Potri.013G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.