Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73710 1206 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23020 555 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 190 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 188 / 1e-48 PGR3 proton gradient regulation 3 (.1) AT2G18940 176 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14770 174 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39980 172 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 171 / 8e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 172 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 169 / 1e-43 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078900 [exp] 592 / 0 AT3G23020 1046 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 228 / 2e-61 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.019G043101 [exp] 202 / 3e-53 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 187 / 6e-50 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G297300 [exp] 189 / 2e-49 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 185 / 4e-49 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G092100 [exp] 187 / 1e-48 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 182 / 3e-48 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 180 / 2e-47 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041172 [exp] 528 / 3e-173 AT3G23020 953 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 208 / 9e-56 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 197 / 8e-52 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 198 / 9e-52 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10037968 [exp] 188 / 1e-48 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 186 / 1e-48 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10034616 [exp] 186 / 2e-48 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 185 / 2e-48 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018075 [exp] 184 / 1e-47 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10026206 [exp] 180 / 5e-46 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G144800.4 pacid=42812162 polypeptide=Potri.013G144800.4.p locus=Potri.013G144800 ID=Potri.013G144800.4.v4.1 annot-version=v4.1 ATGCTTCACAGTGGCAGTTACAGTTACAGTTACAGTCAGAGTCACAATCAAACTTCAAGAGAATTAGGGCATCAAAATCTCCTCCAACTGAACATTTACT CTCCAAGTAAGCTCCTTTCTCTTCATTCTCCTAGGGTTTTTATAGGGTTTAATAACAACCATCTTAAAAATCATAACTTTTCAAGAAGAAAGCACTTCCC TTTACCCAACAATGCTTTACTTGGTGATAAAAGAGTTTTATATTCACAAACCCAGAAACAAAGTAGTAAAGAAAGTAAGGTTTTTTTAGGGTTTAAGCTT CAGTGTCACTCGAAGACTCTAACTTTACCGACTAAGGGTTTTTCAGTAAATGGTAAAAAGAAGAAGTATGGTGGTGTTTTGCCATCAATTTTAAGGTCTT TAGAGTCTAATACTGATGTTGAGAAAACCCTTTATTCCTTTTGTGAGAATTTGAGTCCTAAAGAACAGACCGTGGTTCTTAAAGAACAGAGGAATTGGGA GAGAGTTGTTAGGGTTTTCGAGTTTTTTAAGTCGCAGAAGGATTATGTTCCGAATGTGATTCATTATAATATTGTGCTTCGAGTGTTGGGTAGAGCTAAG AGATGGGATGAATTGCGGCTTTGTTGGATGGATATGGCGAAAAATGGGGTTTTGCCGACGAATAATACTTATGGAATGCTTGTTGATGTGTATGCCAAAG CGGGTCTTGTTGAAGCTCTTTTGTGGATTAAACATATGAGACTTAGAGGGTTATTTCCAGATGAGGTTACAATGAATACTGTTGTCAAGGTTTTGAAGGA TGTGGGGGAGTTTGACAAGGCAGAGAGGTTCTATAAGGATTGGTGTGCTGGAAGGGTTGAGTTGGATGGTCTTGAATTGGATTCTATGCTTGATTCTGAA AATGGGTCTCGATCTGAACCAGTTAGTTTTAAGCATTTTTTGTTGACTGAGCTTTTCAAAACAGGAGGGAGAGTAAAGATTGGGGGTTCATCAGATGAAG AAACACTGGTTAGGAAGCCATGTCTAACATCCACATATAATACGTTGATTGATTTGTATGGGAAGGCAGGACGTCTCAAGGATGCAGCTGAAGTCTTTTC AGAAATGTTGAAATCTGGGGTGGCAATGGATACTATCACTTTCAATACCATGATCTTTACTTGTGGAAGTCATGGACTTTTGTCAGAAGCAGAGTCTTTG CTTGATAAGATGGAAGAAAGACGGATATCTCCTGATACGAGAACTTATAATATATTTTTATCTCTATATGCTGATGCAGGAAATATTAATGCAGCCCTTG AGTGTTATTGGAAGATTAGAAATGTGGGTCTTGTTCCTGATATTGTATCTCATCGAACTATACTTCATATATTATGTGGAAGGAATATGGTAAGAGAAGT GGAGGCTGTTATTGAAGAAATGAAGAAGTCTTCTCAGAAAATTGATGTGCATTCTGTGCCTGGTATCATTAAAATGTATATTAATGAAGGTTTGCATGAT AGAGCAAATAACCTTTTAGACAAGTGCCAGTTTGATGTTGGATTCTCATCAAAGGTTCGTGCAGCAATTATCGATGCTTATGCTGAAAGGGGGCTTTGGG CTGAAGCAGAGGCTGTCTTTTATGGAAAAAGGGATTTGTTGGGACCGGAGAAGGGTGTTTTGGAATATAATGTCATGGTCAAAGCTTATGGTAAGGCAAA GCTTTATGATAAAGCCTTTTCTCTCTTTAAGGGCATGAGAAATCATGGGACTTGGCCTGATGAGGTCACATATAATTCTCTTATCCAAATGTTCTCTGGT GGTGATTTAATGGATCAAGCTAGGGACCTCTTAGATGAAATGCAAGAAGCAGGGTTTAAACCGCAATGTCTAACCTTCTCTGCTGTCATGGCATGCTATG CCCGTCTGGGCCAGCTTTCTGATGCAGTTGATGTTTACCAAGAAATGGTAAAGGCAGGAGTAAAACCTAATGAAGTTGTTTATGGGTCTTTAATCAATGG ATTTGCGGAAGTTGGAAATGTTGAAGAAGCTCTGAAATATTTTCGCATGATGGAAGAAAGCGGGATTCCTGCAAATCAGATAGTGCTGACTTCCCTGATC AAGGTTTATAGTAAGCTGGGATGCTTTGACGGAGCAAAACATTTGTATAAGAAGATGAAGGATTTGGAGGGTGGTCCTGATATTATTGCATCAAATAGTA TGATCAGTCTTTATGCAGACCTTGGAATGGTATCTGAAGCTGAATTGGTTTTCAAAAATTTGAGAGAAAATGGTCAGGCTGATGGGGTTTCCTTTGCGAC CATGATGTATCTGTATAAGAGCATGGGCATGCTTGATGAAGCCATTGATATTGCAGAGGAGATGAAGCAGTCAGGTTTACTGAGGGACTGTGTGTCATAT AATAAGGTAATGGCATGCTATGCCACCAATGGTCAGCTACGTGAGTGTGCTGAATTGTTGCATGAGATGATTGGCCAGAAACTGTTGCCTGATGGTGGAA CCTTTAAAATTTTATTCACTGTCTTGAAAAAAGGGGGCTTTCCATCTGAAGGCATAGCACAGCTAGAATCAGCTTATCTGGAAGGAAAACCTTATGCTAG ACAAGCTGTCATCACCTCCATTTTCTCTGTAGTGGGTCTGCATGCTTTAGCGCTCGAGTCATGTGAGTCTTTCACAAAAGCAGAAGTAGCTCTCGATTCC TTTGCCTACAATGTTGCAATATATGCTTATGGGTCATCAGGGGAGATTGATAAAGCTTTGAAAACATTCATGAAAAGGCAGGATGAAGGCCTTGAACCAG ACCTTGTTACTTCTATTAATCTGGTTCATTGTTATGGGAAAGCTGGTATGGTTGAAGGTGTGAAGAGGATTTATAGCCAATTAAAGTATGGAGAGATCAA GCCCAATGATTCTCTAGTCAAGGCTGTCGTGGATGCTTATAAAAATGCCAACAGGCATGATCTTGCCGAATTGGTTAACCAAGACATAAGATTTGGTTTT GATTCTCAACAATATTCTGATTCTGAAATTGAAGCCGGGTCTGATGAAAGTTCTCTGGGCTTTTAG
AA sequence Show only first row Show all	>Potri.013G144800.4 pacid=42812162 polypeptide=Potri.013G144800.4.p locus=Potri.013G144800 ID=Potri.013G144800.4.v4.1 annot-version=v4.1 MLHSGSYSYSYSQSHNQTSRELGHQNLLQLNIYSPSKLLSLHSPRVFIGFNNNHLKNHNFSRRKHFPLPNNALLGDKRVLYSQTQKQSSKESKVFLGFKL QCHSKTLTLPTKGFSVNGKKKKYGGVLPSILRSLESNTDVEKTLYSFCENLSPKEQTVVLKEQRNWERVVRVFEFFKSQKDYVPNVIHYNIVLRVLGRAK RWDELRLCWMDMAKNGVLPTNNTYGMLVDVYAKAGLVEALLWIKHMRLRGLFPDEVTMNTVVKVLKDVGEFDKAERFYKDWCAGRVELDGLELDSMLDSE NGSRSEPVSFKHFLLTELFKTGGRVKIGGSSDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFTCGSHGLLSEAESL LDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILHILCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHD RANNLLDKCQFDVGFSSKVRAAIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPDEVTYNSLIQMFSG GDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMMEESGIPANQIVLTSLI KVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYADLGMVSEAELVFKNLRENGQADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSY NKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLESAYLEGKPYARQAVITSIFSVVGLHALALESCESFTKAEVALDS FAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTSINLVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKNANRHDLAELVNQDIRFGF DSQQYSDSEIEAGSDESSLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	0	1
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	2.44	0.9259
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	3.31	0.9314
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	4.47	0.9211
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	5.47	0.9285
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	6.92	0.8777
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	7.74	0.9215
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	10.48	0.9109
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	11.61	0.9139
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	12.72	0.9209
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	13.74	0.8965

Compare expression of checked genes

Potri.013G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.