Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03540 721 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G33170 360 / 1e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 347 / 8e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 346 / 9e-109 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 343 / 5e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 342 / 8e-107 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 332 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 336 / 3e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 332 / 5e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 326 / 2e-101 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 393 / 4e-125 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 365 / 4e-116 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 363 / 1e-115 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G151200 [exp] 362 / 2e-115 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 362 / 2e-115 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 361 / 3e-114 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 360 / 4e-113 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 361 / 2e-112 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 354 / 4e-112 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033713 [exp] 839 / 0 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10022890 [exp] 365 / 1e-116 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 360 / 1e-114 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 360 / 6e-113 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 358 / 2e-112 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 349 / 5e-112 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 356 / 1e-110 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 352 / 1e-110 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 343 / 1e-108 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 343 / 3e-108 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G145000.1 pacid=42811550 polypeptide=Potri.013G145000.1.p locus=Potri.013G145000 ID=Potri.013G145000.1.v4.1 annot-version=v4.1 ATGAAGCTTCTTCTCTCTAGCCAACGCCATTACAGCACGCTTGCTTCTCTAAATCTCAAAACTTTAGAAAACCCACAATCCAAAGCATACAAAATCATCC AGTACTGCAAATCCGGTTCGCTTTTTGAAGCAATTCACGTCCTAAACTCCATAGACTGGACAAGACTCTCCAACAAACCATTCTTTTATGCTTCTCTCTT GCAAACTTGTACTAAAGCTGTCTCCTTTACTCACGGTATCCAATTCCATTCTCATGCTATAAAATCTGGTCTTGATACTGATAGGTTTGTGGGGAATAGC TTGCTTGCACTTTATTTCAAGCTGGGCCCTAATCTTTTTGAGGCAAGAAGGGTTTTTGATGGGTTGTTTTATAAAGATTTGATTTCTTGGACTTCAATGA TAACTGGTTATGTTAAGGTAGAAAAACCAAAGAAGTCTCTTGAATTGTTTTTGGAAATGTTGGGTCTTGGTATTGAGCCAAATGGGTTCACTTTATCTGC TGTGATAAAGGCGTGTTCGGGACTTGGGGACTTAAGGCTTGGTAAATGCTTTCATGGGGTTGTTATGGTTCGTGGGTTTGATTTGAATGATGTTATTTCT ACTGCTTTGATTGATATGTATGGAAGGAATTCTGCGGTGGATGATGCGATCCTGGTGTTTGTTGAATTGCCTCAACCAGATGCTATTTGTTGGACCTCGA TCATTTCAGCTTTTACGAGGAACGATGTGTATGATAAAGCTTTGGGATTCTTTTATTCGATGTGTAGGAAACATGGGTTGTCGCCTGATGGGTTTACGTT TGGGACGGTTTTGACTGCTTGTGGTAATTTAGGGAGGTTGAAGCAAGGTAAAGAAGTGCATGCTAAGGTGATTACATCAGGATTGAGTGGAAATGTTTTT GTTGAGAGCAGCCTTGTTGATATGTATGGGAAATGTAGGTTGGTTAACCAATCTCAATGTGTTTTTGATAGAATGAGTGTAAAGAATTTGGTTTCTTGGA CTGCATTGTTAGGGGGGTATTGTCAAAATGGTGACTTCGAATCTGTTATTAGGATTTTTAGAGAAGGGAAAAAGGTTGATACCTATAGTTTTGGAACTGT TCTTCGTGCTTGTGCAGGTTTGGCAGCTGTAAGACAAGGGAAAGAGGTTCACTGCCAGTATGTGAAAAGGTGTTGTTGGCGAGATGTGGTCACAGAATCA GCATTAGTTGATCTTTATGCAAAATGTGGTTGTATTGATTTTGCAGACAGAATTTTTGTGCGGATGTCAGTTAGAAATTTGATAACTTGGAACTCGATGA TTTATGGCTTTGCCCAGAATGGAAGAGGTGGAGAAGTTTTTCAATTATTTGATGAGATGATTGAAGAGGGGATTAGGCCTGATTATATTAGTTTTGTTGG GGTTCTTTTTGCTTGTAGTCATGCTGGTTTGGTTGACCAAGGGAAGAAATATTTTGCCGCAATGACTGAGGTATATGAAATTAAACCAGGAATTGAGCAT TACAATTGCATGATTGATCTTCTAGGCCGTGCTGGTTTGCTAGAAGAAGCAGAAAATTTGATAGAGAACGCAAATTGCAGAGATGAGCCATCTCTTTGGA CAGTTCTTCTTGGTGCTTGTGCAGCCAGTCCACACTCTGCTACTGCAGAGCGCATTGCAAAGAAAGCAGTGGAATTGAAACCTGACCACCACCTCAGCTA TGTATATTTAGCTAATGTCTATAGAGCAGTTGGCCGATGGGATGATGCTGTTAAAATTCGGAATTTAATGACGAAGAGAGGTGTTGGCAAAATGCCAGGC ACAAGTTGGATCGAGACTTAA
AA sequence Show only first row Show all	>Potri.013G145000.1 pacid=42811550 polypeptide=Potri.013G145000.1.p locus=Potri.013G145000 ID=Potri.013G145000.1.v4.1 annot-version=v4.1 MKLLLSSQRHYSTLASLNLKTLENPQSKAYKIIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNS LLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVIS TALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVF VESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTES ALVDLYAKCGCIDFADRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEH YNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPG TSWIET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	2.00	0.9562
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	3.00	0.9504
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	3.74	0.9372
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	3.87	0.9456
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	4.00	0.9471
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	4.89	0.9426
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	5.47	0.9285
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	8.66	0.9169
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	9.16	0.9226
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	9.94	0.9341

Compare expression of checked genes

Potri.013G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.