Plant FIBer expression Database

Potri.013G145300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03530 281 / 2e-83 ATNAF1 nuclear assembly factor 1 (.1)
AT4G03380 48 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G104400
[exp]
760 / 0 AT1G03530 244 / 3e-70 nuclear assembly factor 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022870
[exp]
271 / 3e-80 AT1G03530 274 / 3e-80 nuclear assembly factor 1 (.1)
Lus10024956
[exp]
266 / 3e-80 AT1G03530 266 / 1e-79 nuclear assembly factor 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF04410 Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence
>Potri.013G145300.1 pacid=42811261 polypeptide=Potri.013G145250.1.p locus=Potri.013G145300 ID=Potri.013G145300.1.v4.1 annot-version=v4.1
ATGGTGGGGTTTGTATCTGAACCCTCCACCATTAAAGAAGAAGAAGAAGAAAGCAACCAAGTTTCAAAAGCTAGAAACTTGGAAGACCCAATTGACCCTT
TTGATCAAAAGCTCACAAATTTTGCTGATTCTTTTCTTGATTTTGATTCTATAGAGGAGTTTTTTGAAGGCCCAGAAAGGTTTAGTTTAGATTTTGAGAA
GAGAATGGAGATGGATGATAAAGGGCTTGTTGTTAAGGACCTGGTTGTTAATGTTTCTGATTCAGTTTTCGAAGAAAAGAACGGAATTGTTGATGGGTCT
GATCTGGGGGGTTTGGTGAAGGTGAAGGAAGAAAGAGTGGAGCTTGAAAGAGGAGGGAGTTTGGGGTGTTCTATTGAGGAGGAGATGGGAAGGGTTAGTT
TGGTTGCTGAACTGAGTTTAGTTGTGGTTGATGGGGGTGCAAAAGTTGTGGGTGATGAGGCAGAGATAGGTAATGGTGGTTTGATGAATGGGTCAGGTTC
AGATATTGGTGACGGTAGTGGTGTGAATGGTAAAATAGTGAGTGATGAAGAGGAGAGCGAAAGTGAAAGCGAGTCTGAATCGGAGAGTGAAAGCAGTTCA
TCTTCTAGTAGCAGTGATGATGATGATGGTGAACAAGAAGAGGAGAGTGATCAGGAAGAGGAGGAGAAGAAGGTGGAAGTTAGAATGGAAGTAAATAAAA
GGTTAGATGGTTTGGGTGACATGGAAGAAGGTGAGATAAGGGATGCTGATGGAGAGGAAATGGTTGCTGGGAATGATAGTGAGGATGAGGGTGAGGAGGA
GGAGGAGGAGGTGGTGGAGGAGGAGGAGGACGATGGATACAAGATGGTTGAGTGGAGTGATGTTGATGAGGAGGAGGATGCTGCTACGGGAGAGCCTATT
AGGTCGAAGAACGAGGTTCAGTTTCTCTCTCCTGTTCCTCCTGTTCATGCTTCATTGGAACTTCATCATCAGATGCTACCTGTTGGAGTTGTTTTGTCGG
CTATAGGTCCCCAGGTTATAGTACAAGGGGTGGAAAAGCACAATCCCTTGAATGAGGGTTCTATCCTGTGGATAACTGAAAAGAGATCCCCGTTGGGGTT
GGTAGATGAGATTTTTGGACCTGTCAAAAACCCATACTACGTGGTGAGATACAATTCAGAAAGTGAAGTCCCTTCTGGGGTCCTTAATGGTACTTTGATA
TCTTTTGTTCCTGAGTTTGCCAATCATGTGCTCAATGTCAAGAATCTTCACAAGAAAGGGTATGATGCATCTGGTGAATACGATGAAGAGTTAACTAATG
AGACAGAATTTTCAGATGATGAGAAAGAGGCGGAGCACAAGAGGATGTTAAAAATGTCAAAGAGGGGAGTTAGTGATGAGAAATCTGGAAAAAACAAAAA
CAATAGAAGGAAGGTGAAAAATAGGGGTGGCGGTTGGAAGAATAATAAACCTTTTGGGGAGCAAATGCCAACTGGTGTAGATCAGCTACCACCCGATCAA
AATTTGCGTAATGACTCTGCTGTTGGAACATCATTGGCCCCAGTGCCTCAGACAACTGGTGTTTATGCACCTTCAAATGGTGTATGGACGAGTATGGTAC
CATCTCAGCAGCCTCAAGCTTTAGCAATTCGAGGTGGGTTTCCATCTAATAATATGCCTTGGCCTGTACAGAGTCAACTTCAGCATCCCTATCAGATACC
TATGGCAAATGGTATGCCAATTCAGCAACAGTTCAATCCTGGTCAGAGATCACTTCCTAATGCTTTGTTCGCAGGCGGACAACCAAATTTCTTTGCTGGA
CCTGCATATCCTCCACCATGGCCTGTAGTGGGAGGACACTACTTTAACCAAGCTGCATTTGGAACAGGATTTCAGGTTCAACCTAATCCTCCAGCTATGA
ATGTGGTAGACCAAGGAATGATATCCACTGGACCGCCTTTAGTACATAACTGTAGTTTCCAACCACCAGCCATCCCTCCTGGCAACATACAAGCTCCTCA
GCAATTCAATGCAGGAGCCTCTTCCAGCCATGGAAGAAAACCTTATCGTAGAGGGGGTGGTCGTTTTTCAGGTGGGAGAGGTAGACAGCCACCAAACTGA
AA sequence
>Potri.013G145300.1 pacid=42811261 polypeptide=Potri.013G145250.1.p locus=Potri.013G145300 ID=Potri.013G145300.1.v4.1 annot-version=v4.1
MVGFVSEPSTIKEEEEESNQVSKARNLEDPIDPFDQKLTNFADSFLDFDSIEEFFEGPERFSLDFEKRMEMDDKGLVVKDLVVNVSDSVFEEKNGIVDGS
DLGGLVKVKEERVELERGGSLGCSIEEEMGRVSLVAELSLVVVDGGAKVVGDEAEIGNGGLMNGSGSDIGDGSGVNGKIVSDEEESESESESESESESSS
SSSSSDDDDGEQEEESDQEEEEKKVEVRMEVNKRLDGLGDMEEGEIRDADGEEMVAGNDSEDEGEEEEEEVVEEEEDDGYKMVEWSDVDEEEDAATGEPI
RSKNEVQFLSPVPPVHASLELHHQMLPVGVVLSAIGPQVIVQGVEKHNPLNEGSILWITEKRSPLGLVDEIFGPVKNPYYVVRYNSESEVPSGVLNGTLI
SFVPEFANHVLNVKNLHKKGYDASGEYDEELTNETEFSDDEKEAEHKRMLKMSKRGVSDEKSGKNKNNRRKVKNRGGGWKNNKPFGEQMPTGVDQLPPDQ
NLRNDSAVGTSLAPVPQTTGVYAPSNGVWTSMVPSQQPQALAIRGGFPSNNMPWPVQSQLQHPYQIPMANGMPIQQQFNPGQRSLPNALFAGGQPNFFAG
PAYPPPWPVVGGHYFNQAAFGTGFQVQPNPPAMNVVDQGMISTGPPLVHNCSFQPPAIPPGNIQAPQQFNAGASSSHGRKPYRRGGGRFSGGRGRQPPN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
0 1
AT2G34780 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, materna... Potri.011G161901
[exp]
1.41 0.8660
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.002G182600
[exp]
1.73 0.8649
AT3G16840 P-loop containing nucleoside t... Potri.010G063600
[exp]
2.23 0.8522
AT1G31970 STRS1 STRESS RESPONSE SUPPRESSOR 1, ... Potri.003G098800
[exp]
2.82 0.8609
AT5G58370 P-loop containing nucleoside t... Potri.019G128000
[exp]
3.46 0.7878
AT1G69070 unknown protein Potri.010G140100
[exp]
4.89 0.8272
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
4.89 0.8483
AT5G66540 unknown protein Potri.015G078500
[exp]
5.47 0.8018
AT3G02490 Pentatricopeptide repeat (PPR)... Potri.017G108100
[exp]
5.47 0.7851
AT1G29320 Transducin/WD40 repeat-like su... Potri.015G092400
[exp]
6.48 0.7611

Potri.013G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.