Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28190 380 / 1e-135 ULT ULT1 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) AT2G20825 343 / 4e-121 ULT ULT2 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104500 [exp] 462 / 5e-168 AT4G28190 358 / 6e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039791 [exp] 406 / 2e-145 AT4G28190 359 / 8e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10018560 [exp] 311 / 1e-107 AT4G28190 273 / 2e-92 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10038586 [exp] 215 / 6e-70 AT2G20825 205 / 5e-66 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G145400.1 pacid=42812579 polypeptide=Potri.013G145400.1.p locus=Potri.013G145400 ID=Potri.013G145400.1.v4.1 annot-version=v4.1 ATGGCTAATGGAGCTGAGAGAGAGATGGTGTTGTTGTTTAGTGAAGAAGAGTTGAGAGAGATGAGTGGGGTCAAGAGAGGTGGAGATTACATAGAAGTGA TGTGTGGGTGTACTAGCCATAGATATGGTGATGCTGTTGGTAGGCTTAGGGTTTTTATCAATGGTGAACTTGAAATCACATGTGAATGCACTCCTGGTTG TGATGAAGACAAGATGACTCCTGCTGCATTTGAGAAGCACTCTGGAAGAGAGACAGCTAGAAAATGGAAGAACAATGTATGGGTCATAGTTAATGGGGAG AAGGTTCCATTGGTAAAGACAGTGCTGCTCAAATACTACAACCAGGCCTCAAAAAATGGCAATGGATCCCACAGGTCACACAATGGACGAGTTTGTCATC GCGATGAGTTTGTTCGCTGTAATAAATGTAACAAGGAACGCAGGTTTCGGTTACGGTCCAAAGAGGAGTGTCGGATTCACCATGATGCTTTGGCTGATGC GAACTGGAAATGTGCTGATATGCCATATGACAAAATAACATGTGATGATGACGAAGAACGGGCAAGTCGAAGGGTGTACAGGGGTTGCACCCGTTCTCCA ACATGCAAGGGCTGCACTTCCTGTGTGTGCTTTGGTTGTGAAATCTGTCGTTTCTCAGATTGCAGCTGCCAAACTTGCACCGACTTCACTAGGAATGCAA AAGTTTGA
AA sequence Show only first row Show all	>Potri.013G145400.1 pacid=42812579 polypeptide=Potri.013G145400.1.p locus=Potri.013G145400 ID=Potri.013G145400.1.v4.1 annot-version=v4.1 MANGAEREMVLLFSEEELREMSGVKRGGDYIEVMCGCTSHRYGDAVGRLRVFINGELEITCECTPGCDEDKMTPAAFEKHSGRETARKWKNNVWVIVNGE KVPLVKTVLLKYYNQASKNGNGSHRSHNGRVCHRDEFVRCNKCNKERRFRLRSKEECRIHHDALADANWKCADMPYDKITCDDDEERASRRVYRGCTRSP TCKGCTSCVCFGCEICRFSDCSCQTCTDFTRNAKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Potri.013G145400 [exp]	0	1
AT4G02740			F-box/RNI-like superfamily pro...		Potri.005G210500 [exp]	8.00	0.6361
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	13.74	0.5820
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130300 [exp]	15.58	0.6167
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Potri.001G082700 [exp]	17.26	0.6327
AT2G25920			unknown protein		Potri.014G122900 [exp]	25.74	0.5335
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Potri.010G221500 [exp]	39.87	0.5819	PABAS
AT1G61210		DWA3	DWD hypersensitive to ABA 3, T...		Potri.011G045500 [exp]	57.13	0.5399
AT1G51610			Cation efflux family protein (...		Potri.010G251300 [exp]	62.86	0.5238
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.009G017300 [exp]	84.00	0.5139
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.012G063800 [exp]	92.34	0.5093

Compare expression of checked genes

Potri.013G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.