Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03520 668 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 654 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 494 / 5e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 488 / 1e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 465 / 1e-162 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 456 / 4e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 430 / 5e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 401 / 4e-138 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 382 / 1e-130 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 370 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104600 [exp] 824 / 0 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 495 / 2e-174 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 476 / 4e-167 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 474 / 3e-166 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 474 / 4e-166 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G066200 [exp] 449 / 9e-157 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 439 / 3e-152 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 439 / 5e-152 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 387 / 2e-132 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033714 [exp] 716 / 0 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 697 / 0 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 493 / 2e-173 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 492 / 6e-173 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 473 / 1e-165 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 468 / 2e-163 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 449 / 1e-156 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 449 / 3e-156 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020316 [exp] 419 / 3e-144 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005676 [exp] 414 / 2e-141 AT3G03690 454 / 3e-158 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G145500.2 pacid=42811152 polypeptide=Potri.013G145500.2.p locus=Potri.013G145500 ID=Potri.013G145500.2.v4.1 annot-version=v4.1 ATGTCTATCAAAAAGGCATTGGTGAGTATGAGGAAGAATGGAAGTTCCCACTCGGGAAGGTTGTTCAGTGATAGAAAATGGCTTATCCCATTCTTTGCAA GCTTGCTAGTGTTCTTAACTCTGTTTTCATCGGCTACTTTTGGGGTGTTTACATCTTCTTTTGGAGGAGAGCAGGTGCCATTTGACATTGTTTCGTATTC AAGACCGGAGGACTCAAGTGGGTATTTCGTAGAATCGGATTTAAAGAAATGGTTTGATAGAAGTAGGTATTCAGAATTGGAACCGCCTAGATTAGCTTAT CTCATTTCAGGTACGAAGGGTGATAGTCAAAGAATGATGAGGACTTTGCAGGCTGTGTATCATCCTAGAAATCAGTATATTCTACATTTGGATCTTGAGG CACCCCCACGAGAAAGGTTGATGTTGGGAGGGTATGTGAAGAATGATCCAACGTTTCAAGAAGTTGGGAATGTGCGTGTAATGGCACAGTCCAACTTGGT GACTTATAAAGGGCCTACAATGTTTGCCTGTACCCTTCAAGCAATTGCAATCATGTTGAGGGAGAGTTTAGAGTGGGACTGGTTTATCAATCTCAGCGCT TCAGATTATCCTCTTGTGACACAAGATGATTTGCTCCATGTGTTCTCAAATTTGTCTAGAAACCTTAATTTCATTGAACATACACAGCTAACTGGATGGA AATTGAACTCCAGGGCAAAACCGATTATTGTTGATCCAGGCCTTTACTCATCAAAGAAATCTGACCTTTATTTTACCACTCAACGCAGATCACTTCCCTC ATCTTTCAAGTTGTTTACTGGTTCAGCATGGGTAATGCTGACACGATCGTTTCTCGAATACTGTATAATGGGATGGGAGAACCTTCCACGAACTATCCTA ATGTACTACACAAATTTCATCTCCTCTCCTGAAGGATATTTCCACACTGTTATTTGCAATACTGAAGAATTCCAAAACACAGCCATAGGTCATGATCTCC ACTACATAGCCTGGGACAGTCCTCCTAAGCAACACCCTATCTCTTTGACAATGAAAGACTTTGATAAAATGGTTAAAAGCAATGCCCCATTTGCCCGGAA ATTTGCAAGGGATGATCCAGTTCTAGACAAGATTGATAAAGAGATTCTAAACCGCACGGGCAGGTTTGCTCCTGGAGCATGGTGTATTGGCGGCGCAGAC AATGGATCTGATCCATGCTCCATACCCGGTAATTATTCAGTATTTAGACCAGGTCCTGGTGCTCAGAGGTTACAAGAACTGCTCCAGACATTATTGTCCG AAGATTTTCGAAAAAAACAGTGTTCATGA
AA sequence Show only first row Show all	>Potri.013G145500.2 pacid=42811152 polypeptide=Potri.013G145500.2.p locus=Potri.013G145500 ID=Potri.013G145500.2.v4.1 annot-version=v4.1 MSIKKALVSMRKNGSSHSGRLFSDRKWLIPFFASLLVFLTLFSSATFGVFTSSFGGEQVPFDIVSYSRPEDSSGYFVESDLKKWFDRSRYSELEPPRLAY LISGTKGDSQRMMRTLQAVYHPRNQYILHLDLEAPPRERLMLGGYVKNDPTFQEVGNVRVMAQSNLVTYKGPTMFACTLQAIAIMLRESLEWDWFINLSA SDYPLVTQDDLLHVFSNLSRNLNFIEHTQLTGWKLNSRAKPIIVDPGLYSSKKSDLYFTTQRRSLPSSFKLFTGSAWVMLTRSFLEYCIMGWENLPRTIL MYYTNFISSPEGYFHTVICNTEEFQNTAIGHDLHYIAWDSPPKQHPISLTMKDFDKMVKSNAPFARKFARDDPVLDKIDKEILNRTGRFAPGAWCIGGAD NGSDPCSIPGNYSVFRPGPGAQRLQELLQTLLSEDFRKKQCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03520			Core-2/I-branching beta-1,6-N-...		Potri.013G145500 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.001G056100 [exp]	1.41	0.8304
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	6.00	0.8173	Pt-SERK2.2
AT2G29400		PP1-AT, TOPP1	type one protein phosphatase 1...		Potri.001G245700 [exp]	10.00	0.8336	TOPP1.2
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.001G407000 [exp]	10.14	0.7476
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	25.15	0.8237
AT4G36660			Protein of unknown function (D...		Potri.014G181600 [exp]	29.73	0.7791
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	30.49	0.8090
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.013G031400 [exp]	31.30	0.7909
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	33.48	0.7834
AT5G54780			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G419100 [exp]	36.74	0.8100

Compare expression of checked genes

Potri.013G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.